WormBase Tree Display for Gene: WBGene00114106
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| WBGene00114106 | SMap | S_parent | Sequence | PPA_ChrI | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 5 | |||||||
| Name | CGC_name | Ppa-lgc-41 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA24552 | ||||||||
| Molecular_name | PPA24552 | ||||||||
| PPA24552.1 | |||||||||
| PP59772 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000081436 | ||||||||
| UMM-S196-18.33 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-lgc-41 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:06 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 08 Feb 2019 15:42:29 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 3 | 08 May 2019 10:09:25 | WBPerson1983 | Name_change | CGC_name | Ppa-lgc-41 | ||||
| 4 | 28 May 2021 19:05:21 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 5 | 28 Jul 2021 11:12:29 | WBPerson1983 | Name_change | CGC_name | Ppa-lgc-41 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lgc | ||||||||
| RNASeq_FPKM | WBls:0000032 | 11.7772 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 4.63632 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 5.47117 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| GO_annotation | 00184404 | ||||||||
| 00184405 | |||||||||
| 00184406 | |||||||||
| 00184407 | |||||||||
| 00184408 | |||||||||
| 00184409 | |||||||||
| Ortholog (29) | |||||||||
| Paralog (120) | |||||||||
| Structured_description | Automated_description | Predicted to enable extracellular ligand-gated monoatomic ion channel activity and transmembrane signaling receptor activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans lgc-41. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA24552 | |||||||
| Corresponding_transcript | PPA24552.1 | ||||||||
| Other_sequence | EF619540.1 | ||||||||
| GT571037.1 | |||||||||
| JI242997.1 | |||||||||
| JI250099.1 | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_51334 | |||||||
| GPL14372_Probes_51335 | |||||||||
| GPL14372_Probes_51336 | |||||||||
| Expression_cluster | WBPaper00041207:PP_dauer_up | ||||||||
| Remark | [190208 pad] The CGC name Ppa-lgc-41 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-lgc-41 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
