WormBase Tree Display for Gene: WBGene00114753
expand all nodes | collapse all nodes | view schema
| WBGene00114753 | SMap | S_parent | Sequence | PPA_ChrII | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 5 | |||||||
| Name | CGC_name | Ppa-toe-1 | Inferred_automatically | from gene merge | |||||
| Sequence_name | PPA25199 | ||||||||
| Molecular_name | PPA25199 | ||||||||
| PPA25199.1 | |||||||||
| PP61648 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000082047 | ||||||||
| UMM-S387-0.13 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-toe-1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:06 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 17 Nov 2017 15:19:43 | WBPerson4055 | Name_change | CGC_name | Ppa-toe-1 | ||||
| 3 | 24 Nov 2017 09:46:52 | WBPerson4055 | Event | Acquires_merge | WBGene00204140 | ||||
| 4 | 24 Nov 2017 09:46:52 | WBPerson4055 | Event | Acquires_merge | WBGene00205756 | ||||
| 5 | 24 Nov 2017 09:46:52 | WBPerson4055 | Event | Acquires_merge | WBGene00206100 | ||||
| Acquires_merge | WBGene00204140 | ||||||||
| WBGene00205756 | |||||||||
| WBGene00206100 | |||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | toe | ||||||||
| RNASeq_FPKM | WBls:0000032 | 2.56514 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 0.605834 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 1.05699 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| Ortholog (29) | |||||||||
| Structured_description | Automated_description | Is predicted to encode a protein with the following domains: BP28CT (NUC211) domain; Tetratricopeptide repeat; Inclusion body clearance protein Iml2/Tetratricopeptide repeat protein 39; Armadillo-type fold; Armadillo-like helical; Iml2/Tetratricopeptide repeat protein 39; BP28, C-terminal domain; Tetratricopeptide-like helical domain superfamily; U3 small nucleolar RNA-associated protein 10; and U3 small nucleolar RNA-associated protein 10, N-terminal. Is an ortholog of C. elegans toe-1. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA25199 | |||||||
| Corresponding_transcript | PPA25199.1 | ||||||||
| Other_sequence (11) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_84230 | |||||||
| GPL14372_Probes_84231 | |||||||||
| GPL14372_Probes_84232 | |||||||||
| GPL14372_Probes_84233 | |||||||||
| GPL14372_Probes_84234 | |||||||||
| GPL14372_Probes_84238 | |||||||||
| GPL14372_Probes_84239 | |||||||||
| GPL14372_Probes_84240 | |||||||||
| Expression_cluster | WBPaper00041207:PP_dauer_up | ||||||||
| Method | Gene |
