WormBase Tree Display for Gene: WBGene00116107
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| WBGene00116107 | SMap | S_parent | Sequence | PPA_ChrI | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 5 | |||||||
| Name | CGC_name | Ppa-swsn-4.1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA26553 | ||||||||
| Molecular_name | PPA26553 | ||||||||
| PPA26553.1 | |||||||||
| PP62259 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000084977 | ||||||||
| UMM-S7-42.8 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-swsn-4.1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:06 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 20 Mar 2018 10:26:13 | WBPerson4025 | Name_change | CGC_name | Removed | ||||
| 3 | 04 Feb 2020 15:43:57 | WBPerson1983 | Name_change | CGC_name | Ppa-swsn-4.1 | ||||
| 4 | 04 Jun 2020 14:38:22 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 5 | 28 Jul 2021 11:12:29 | WBPerson1983 | Name_change | CGC_name | Ppa-swsn-4.1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | swsn | ||||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||||
| GO_annotation | 00185300 | ||||||||
| 00185301 | |||||||||
| 00185302 | |||||||||
| Ortholog (59) | |||||||||
| Paralog (18) | |||||||||
| Structured_description | Automated_description | Predicted to enable ATP binding activity; ATP-dependent chromatin remodeler activity; and histone binding activity. Is an ortholog of C. elegans swsn-4. In C. elegans, swsn-4 is involved in gonad development. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA26553 | |||||||
| Corresponding_transcript | PPA26553.1 | ||||||||
| Other_sequence | FG580369.1 | ||||||||
| CV199020.1 | |||||||||
| EL888643.1 | |||||||||
| PPC15067_1 | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_886 | |||||||
| GPL14372_Probes_887 | |||||||||
| Remark | [180319 gw3] The CGC name Ppa-psa-4 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson4025 | ||||||
| [200603 pad] The CGC name Ppa-swsn-4.1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
