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WormBase Tree Display for Gene: WBGene00116898

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Name Class

WBGene00116898SMapS_parentSequencePPA_ChrI
IdentityVersion2
NameSequence_namePPA27344
Molecular_namePPA27344
PPA27344.1
PP62699
Other_nameGENEPREDICTION_SNAP300000084165
UMM-S207-22.12Person_evidenceWBPerson606
Public_namePPA27344
SpeciesPristionchus pacificus
HistoryVersion_change106 Aug 2008 09:05:07WBPerson4055EventImportedfrom NGASP
224 Nov 2017 09:46:52WBPerson4055EventAcquires_mergeWBGene00204261
Acquires_mergeWBGene00204261
StatusLive
Gene_infoBiotypeSO:0001217
RNASeq_FPKMWBls:00000320.567074From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010.567074From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
0.635465From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
1.33932From_analysisRNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
GO_annotation00185613
00185614
OrthologWBGene00144956Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00038222Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040510Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00228162Brugia malayiFrom_analysisWormBase-Compara
WBGene00009460Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00017782Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00123221Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00127378Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00214635Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00216381Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00240023Onchocerca volvulusFrom_analysisWormBase-Compara
CBOVI.g2123Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP26.g20198Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g8687Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g19560Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g19565Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g19567Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g19568Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g19569Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g5910Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g895Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g11295Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g17877Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g13804Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g13212Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g25696Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g29700Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g3414Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g9974Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g11742Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g12722Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g17203Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00702.g13547Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_01104.g15692Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_08634.g21620Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_13110.g24083Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-F25E5.1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cni-ubr-5Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold518.g2762Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold630.g17549Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00123.g4961Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_03450.g30242Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_03650.g30863Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_10768Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_12907Caenorhabditis latensFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g04155Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g2107Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50022800Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_50211110Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00052143Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00057862Caenorhabditis remaneiFrom_analysisWormBase-Compara
chrI_pilon.g1687Caenorhabditis elegansFrom_analysisWormBase-Compara
chrV_pilon.g14718Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00256833Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00289135Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00091716Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00093680Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00099275Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00112263Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00204228Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00277970Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00279783Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00304671Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00306023Pristionchus pacificusFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable ubiquitin-protein transferase activity and zinc ion binding activity. Is an ortholog of C. elegans F25E5.1 and ubr-5.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA27344
Corresponding_transcriptPPA27344.1
Other_sequenceSS01722
HG03772
MP00727
RSC00885_1
MP00702
MIC01101_1
SRC01284_1
MC04034
MH07907
JO473657.1
SR04648
SR00102
HGC10574_1
MCC00540_1
MH04431
MJ03389
MC03497
SRC01626_1
MP00746
Hbac_isotig01724
FC817680.1
JI164077.1
ES412239.1
MI02006
FC815642.1
FC817304.1
ES567128.1
FK803525.1
MI00752
HBC21025_1
SSC02199_1
TSC09302_1
ES412255.1
RS07455
Experimental_infoMicroarray_resultsGPL14372_Probes_20390
GPL14372_Probes_20391
GPL14372_Probes_20392
GPL14372_Probes_20393
GPL14372_Probes_72330
GPL14372_Probes_72331
GPL14372_Probes_72334
GPL14372_Probes_72335
MethodGene