WormBase Tree Display for Gene: WBGene00117190
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| WBGene00117190 | SMap | S_parent | Sequence | PPA_ChrII | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 8 | |||||||
| Name | CGC_name | Ppa-ire-1.3 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA27636 | ||||||||
| Molecular_name | PPA27636 | ||||||||
| PPA27636.1 | |||||||||
| PP72797 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000084340 | ||||||||
| UMM-S10-87.15 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-ire-1.3 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:07 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 20 Mar 2018 10:26:12 | WBPerson4025 | Name_change | CGC_name | Ppa-ire-1.3 | ||||
| 3 | 08 Feb 2019 15:42:28 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 08 May 2019 10:09:22 | WBPerson1983 | Name_change | CGC_name | Ppa-ire-1 | ||||
| 5 | 01 Oct 2019 10:47:49 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 27 Nov 2019 12:48:14 | WBPerson1983 | Name_change | CGC_name | Ppa-ire-1.1 | ||||
| 7 | 28 May 2021 19:05:20 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 8 | 28 Jul 2021 11:12:29 | WBPerson1983 | Name_change | CGC_name | Ppa-ire-1.3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ire | ||||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||||
| GO_annotation | 00185751 | ||||||||
| 00185752 | |||||||||
| 00185753 | |||||||||
| 00185754 | |||||||||
| 00185755 | |||||||||
| Ortholog (51) | |||||||||
| Paralog | WBGene00091492 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| WBGene00273905 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00274756 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00274758 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable ATP binding activity; RNA nuclease activity; and protein kinase activity. Predicted to be involved in mRNA processing. Is an ortholog of C. elegans ire-1. In C. elegans, ire-1 is involved in nematode larval development; response to endoplasmic reticulum stress; and response to hypoxia. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA27636 | |||||||
| Corresponding_transcript | PPA27636.1 | ||||||||
| Other_sequence (20) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_15751 | |||||||
| GPL14372_Probes_15752 | |||||||||
| GPL14372_Probes_15753 | |||||||||
| GPL14372_Probes_15754 | |||||||||
| GPL14372_Probes_15755 | |||||||||
| GPL14372_Probes_34425 | |||||||||
| GPL14372_Probes_34426 | |||||||||
| Remark | [190208 pad] The CGC name Ppa-ire-1.3 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [191001 pad] The CGC name Ppa-ire-1 was deleted as there was no evidence to support it. This name has correctly been assigned to WBGene00274758 | Curator_confirmed | WBPerson1983 | |||||||
| [210528 pad] The CGC name Ppa-ire-1.1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
