WormBase Tree Display for Gene: WBGene00118153
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| WBGene00118153 | SMap | S_parent | Sequence | PPA_ChrI | ||
|---|---|---|---|---|---|---|
| Identity | Version | 11 | ||||
| Name | CGC_name | Ppa-rpom-1 | From_analysis | Inferred_from_orthology | ||
| Sequence_name | PPA28599 | |||||
| Molecular_name | PPA28599 | |||||
| PPA28599.1 | ||||||
| PP75319 | ||||||
| Other_name | GENEPREDICTION_SNAP300000085385 | |||||
| GENEPREDICTION_SNAP300000085386 | ||||||
| UMM-S57-2.51 | Person_evidence | WBPerson606 | ||||
| Ppa-tsp-11 | Inferred_automatically | from gene merge | ||||
| Public_name | Ppa-rpom-1 | |||||
| Species | Pristionchus pacificus | |||||
| History | Version_change (11) | |||||
| Acquires_merge | WBGene00118154 | |||||
| WBGene00204819 | ||||||
| Split_into | WBGene00304993 | |||||
| WBGene00304994 | ||||||
| Status | Live | |||||
| Gene_info | Biotype | SO:0001217 | ||||
| Gene_class | rpom | |||||
| RNASeq_FPKM | WBls:0000032 | 7.12645 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | ||
| RNASeq.pristionchus.WBls:0000032.control_median | ||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||||||
| WBls:0000101 | 4.37927 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||
| 6.01136 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||
| RNASeq.pristionchus.WBls:0000101.control_mean | ||||||
| RNASeq.pristionchus.WBls:0000101.control_median | ||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | ||||||
| GO_annotation | 00186145 | |||||
| 00186146 | ||||||
| 00186147 | ||||||
| Ortholog (33) | ||||||
| Structured_description | Automated_description | Predicted to enable DNA binding activity and DNA-directed 5'-3' RNA polymerase activity. Predicted to be involved in DNA-templated transcription. Is an ortholog of C. elegans rpom-1. | Paper_evidence | WBPaper00065943 | ||
| Curator_confirmed | WBPerson324 | |||||
| WBPerson37462 | ||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||
| Molecular_info | Corresponding_CDS | PPA28599 | ||||
| Corresponding_CDS_history | PPA28599:pp273 | |||||
| Corresponding_transcript | PPA28599.1 | |||||
| Other_sequence (25) | ||||||
| Experimental_info | Microarray_results | GPL14372_Probes_78522 | ||||
| GPL14372_Probes_78523 | ||||||
| GPL14372_Probes_78524 | ||||||
| GPL14372_Probes_78526 | ||||||
| GPL14372_Probes_78527 | ||||||
| Remark | [190208 pad] The CGC name Ppa-rpom-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||
| [210528 pad] The CGC name Ppa-rpom-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||
| Method | Gene |
