WormBase Tree Display for Gene: WBGene00118172
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| WBGene00118172 | SMap | S_parent | Sequence | PPA_ChrI | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | Ppa-cysl-1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA28618 | ||||||||
| Molecular_name | PPA28618 | ||||||||
| PPA28618.1 | |||||||||
| PP57079 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000085404 | ||||||||
| UMM-S57-1.12 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-cysl-1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:07 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 29 Sep 2011 10:46:47 | WBPerson2970 | Name_change | CGC_name | Ppa-cysl-1 | ||||
| 3 | 24 Nov 2017 09:46:52 | WBPerson4055 | Event | Acquires_merge | WBGene00204649 | ||||
| Acquires_merge | WBGene00204649 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cysl | ||||||||
| RNASeq_FPKM | WBls:0000032 | 39.3345 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 39.3345 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| 41.7009 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| 85.7682 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00186153 | ||||||||
| 00186154 | |||||||||
| Ortholog (16) | |||||||||
| Paralog (15) | |||||||||
| Structured_description | Automated_description | Predicted to enable cysteine synthase activity. Predicted to be involved in cysteine biosynthetic process from serine. Is an ortholog of C. elegans cysl-1. In C. elegans, cysl-1 is involved in cysteine biosynthetic process from serine and response to hypoxia. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA28618 | |||||||
| Corresponding_transcript | PPA28618.1 | ||||||||
| Other_sequence (65) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_78480 | |||||||
| GPL14372_Probes_78481 | |||||||||
| GPL14372_Probes_78482 | |||||||||
| GPL14372_Probes_78483 | |||||||||
| Reference | WBPaper00040881 | ||||||||
| Method | Gene |
