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WormBase Tree Display for Gene: WBGene00118187

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Name Class

WBGene00118187SMapS_parentSequencePPA_ChrI
IdentityVersion1
NameCGC_namePpa-ama-1From_analysisInferred_from_orthology
Sequence_namePPA28633
Molecular_namePPA28633
PPA28633.1
PP73986
Other_nameGENEPREDICTION_SNAP300000085419
UMM-S57-0.8Person_evidenceWBPerson606
Public_namePpa-ama-1
SpeciesPristionchus pacificus
HistoryVersion_change106 Aug 2008 09:05:07WBPerson4055EventImportedfrom NGASP
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classama
RNASeq_FPKMWBls:00000324.85726From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010117.9249From_analysisRNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
4.85726From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
7.59405From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
GO_annotation00186177
00186178
00186179
Ortholog (34)
ParalogWBGene00111260Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00112938Pristionchus pacificusFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable DNA binding activity and DNA-directed 5'-3' RNA polymerase activity. Predicted to be involved in DNA-templated transcription. Is an ortholog of C. elegans ama-1. In C. elegans, ama-1 is involved in embryo development; gastrulation; and mRNA transcription by RNA polymerase II.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA28633
Corresponding_transcriptPPA28633.1
Other_sequence (133)
Experimental_infoMicroarray_resultsGPL14372_Probes_78405
GPL14372_Probes_78406
GPL14372_Probes_78407
GPL14372_Probes_78408
GPL14372_Probes_78409
MethodGene