WormBase Tree Display for Gene: WBGene00118699
expand all nodes | collapse all nodes | view schema
| WBGene00118699 | SMap | S_parent | Sequence | PPA_ChrI | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | Ppa-slo-1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA29145 | ||||||||
| Molecular_name | PPA29145 | ||||||||
| PPA29145.1 | |||||||||
| PP53016 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000085934 | ||||||||
| UMM-S278-4.13 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-slo-1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:07 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 24 Nov 2017 09:46:52 | WBPerson4055 | Event | Acquires_merge | WBGene00206030 | ||||
| Acquires_merge | WBGene00206030 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | slo | ||||||||
| RNASeq_FPKM | WBls:0000032 | 2.82944 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 0.943147 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00186430 | ||||||||
| 00186431 | |||||||||
| 00186432 | |||||||||
| 00186433 | |||||||||
| 00186434 | |||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00092588 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| Structured_description | Automated_description | Predicted to enable monoatomic ion channel activity. Predicted to be involved in potassium ion transport and transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans slo-1. In C. elegans, slo-1 is involved in several processes, including behavioral response to ethanol; pharyngeal pumping; and sarcomere organization. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA29145 | |||||||
| Corresponding_transcript | PPA29145.1 | ||||||||
| Other_sequence (53) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_73692 | |||||||
| GPL14372_Probes_73693 | |||||||||
| GPL14372_Probes_73695 | |||||||||
| GPL14372_Probes_73696 | |||||||||
| GPL14372_Probes_73697 | |||||||||
| Method | Gene |
