WormBase Tree Display for Gene: WBGene00123921

WBGene00123921 SMap: S_parent: Sequence: Cjap.Contig17913
  Identity: Version: 2
    Name: CGC_name: Cjp-vps-53 From_analysis: Inferred_from_orthology
      Sequence_name: CJA04718
      Molecular_name: CJA04718
        CJA04718.1
        JA41872
      Public_name: Cjp-vps-53
    Species: Caenorhabditis japonica
    History: Version_change: 1 29 Aug 2008 14:34:20 WBPerson4055 Event: Imported: NGASP import
        2 29 Jul 2011 11:13:37 WBPerson4055 Event: Imported: Augustus import
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: vps
    RNASeq_FPKM: WBls:0000004 6.38597 From_analysis: RNASeq.japonica.WBls:0000004.control_mean
            RNASeq.japonica.WBls:0000004.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 6.37433 From_analysis: RNASeq.japonica.WBls:0000027.control_mean
            RNASeq.japonica.WBls:0000027.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 6.8405 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
        7.05821 From_analysis: RNASeq.japonica.WBls:0000038.control_mean
            RNASeq.japonica.WBls:0000038.control_median
        7.27592 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
      WBls:0000041 10.0848 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        10.3166 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        10.4075 From_analysis: RNASeq.japonica.WBls:0000041.control_median
        10.4984 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        12.2941 From_analysis: RNASeq.japonica.WBls:0000041.control_mean
        16.759 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        17.1505 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        18.7636 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        5.40908 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
        9.37093 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
      WBls:0000101 9.37093 From_analysis: RNASeq.japonica.total_over_all_stages.control_median
        9.63305 From_analysis: RNASeq.japonica.total_over_all_stages.control_mean
    GO_annotation: 00190459
      00190460
    Ortholog (34)
    Paralog: WBGene00216001 Caenorhabditis japonica From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to be involved in retrograde transport, endosome to Golgi. Predicted to be part of GARP complex. Is an ortholog of C. elegans vps-53. In C. elegans, vps-53 is involved in positive regulation of locomotion involved in locomotory behavior; regulation of brood size; and regulation of dense core granule transport. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CJA04718
    Corresponding_transcript: CJA04718.1
    Other_sequence (52)
  Experimental_info: Expr_pattern: Expr1074956
      Expr1076660
    Microarray_results: GPL14145_CJA04718_1588-1647_0.799_80_C
      GPL14145_CJA04718_1852-1911_0.809_69_B
      GPL14145_CJA04718_2063-2122_0.912_9_A
      GPL14145_CJA08738_271-330_0.683_33_A
  Method: Gene