WormBase Tree Display for Gene: WBGene00123948

WBGene00123948 SMap: S_parent: Sequence: Cjap.Contig16958
  Identity: Version: 3
    Name: CGC_name: Cjp-gtf-2E2 From_analysis: Inferred_from_orthology
      Sequence_name: CJA04744
      Molecular_name: CJA04744
        CJA04744.1
        JA07223
      Public_name: Cjp-gtf-2E2
    Species: Caenorhabditis japonica
    History: Version_change: 1 29 Aug 2008 14:34:20 WBPerson4055 Event: Imported: NGASP import
        2 29 Jul 2011 11:13:37 WBPerson4055 Event: Imported: Augustus import
        3 08 Feb 2019 15:42:27 WBPerson1983 Name_change: CGC_name: Cjp-gtf-2E2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: gtf
    RNASeq_FPKM: WBls:0000004 27.4563 From_analysis: RNASeq.japonica.WBls:0000004.control_mean
            RNASeq.japonica.WBls:0000004.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 6.51673 From_analysis: RNASeq.japonica.WBls:0000027.control_mean
            RNASeq.japonica.WBls:0000027.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 5.30405 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
        6.29376 From_analysis: RNASeq.japonica.WBls:0000038.control_mean
            RNASeq.japonica.WBls:0000038.control_median
        7.28346 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
      WBls:0000041 10.6419 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        11.5871 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        13.8904 From_analysis: RNASeq.japonica.WBls:0000041.control_median
        16.1937 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
        16.2228 From_analysis: RNASeq.japonica.WBls:0000041.control_mean
        23.5762 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        25.0579 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        26.7176 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        6.79792 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
        9.20976 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
      WBls:0000101 10.6419 From_analysis: RNASeq.japonica.total_over_all_stages.control_median
        13.5648 From_analysis: RNASeq.japonica.total_over_all_stages.control_mean
    GO_annotation: 00190480
      00190481
    Ortholog (29)
    Paralog: WBGene00206572 Caenorhabditis japonica From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to be involved in transcription initiation at RNA polymerase II promoter. Predicted to be part of transcription factor TFIIE complex. Is an ortholog of C. elegans gtf-2E2. In C. elegans, gtf-2E2 is involved in transcription initiation at RNA polymerase II promoter. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CJA04744
    Corresponding_transcript: CJA04744.1
    Other_sequence (27)
  Experimental_info: Expr_pattern: Expr1072106
    Microarray_results: GPL14145_CJA04744_472-531_0.929_15_B
      GPL14145_CJA04744_668-727_0.942_8_C
      GPL14145_CJA04744_734-793_0.960_3_A
  Method: Gene