WormBase Tree Display for Gene: WBGene00129106

WBGene00129106 SMap: S_parent: Sequence: Cjap.Contig17625
  Identity: Version: 8
    Name: CGC_name: Cjp-set-3 From_analysis: Inferred_from_orthology
      Sequence_name: CJA09902
      Molecular_name: CJA09902a
        CJA09902a.1
        JA52682
        CJA09902b
        JA55832
        CJA09902b.1
      Other_name: Cjp-bud-31 From_analysis: Inferred_from_orthology
      Public_name: Cjp-set-3
    Species: Caenorhabditis japonica
    History: Version_change: 1 29 Aug 2008 14:34:21 WBPerson4055 Event: Imported: from NGASP
              Name_change: CGC_name: Cjp-set-3
        2 29 Jul 2011 11:13:37 WBPerson4055 Event: Imported: Augustus import
        3 04 Apr 2017 17:04:05 WBPerson2970 Name_change: CGC_name: Cjp-bud-31
                Other_name: Cjp-set-3
        4 20 Mar 2018 10:26:12 WBPerson4025 Name_change: CGC_name: Cjp-set-3
                Other_name: Cjp-bud-31
        5 08 Feb 2019 15:42:29 WBPerson1983 Name_change: CGC_name: Removed
        6 08 May 2019 10:09:26 WBPerson1983 Name_change: CGC_name: Cjp-set-3
        7 28 May 2021 19:05:21 WBPerson1983 Name_change: CGC_name: Removed
        8 28 Jul 2021 11:12:29 WBPerson1983 Name_change: CGC_name: Cjp-set-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: set
    RNASeq_FPKM: WBls:0000004 11.7006 From_analysis: RNASeq.japonica.WBls:0000004.control_mean
            RNASeq.japonica.WBls:0000004.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 4.64711 From_analysis: RNASeq.japonica.WBls:0000027.control_mean
            RNASeq.japonica.WBls:0000027.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 4.55116 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
        5.02982 From_analysis: RNASeq.japonica.WBls:0000038.control_mean
            RNASeq.japonica.WBls:0000038.control_median
        5.50848 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
      WBls:0000041 15.7332 From_analysis: RNASeq.japonica.WBls:0000041.control_mean
        2.48269 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
        28.963 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        29.7492 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        32.7969 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        6.52227 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        7.47541 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        8.89855 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
        8.93828 From_analysis: RNASeq.japonica.WBls:0000041.control_median
        8.97801 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
      WBls:0000101 11.7133 From_analysis: RNASeq.japonica.total_over_all_stages.control_mean
        7.47541 From_analysis: RNASeq.japonica.total_over_all_stages.control_median
    GO_annotation: 00194544
    Ortholog (28)
    Paralog: WBGene00120971 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00131901 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00132230 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00135572 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00211380 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00217061 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00217607 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00219201 Caenorhabditis japonica From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to be located in nucleus. Is an ortholog of C. elegans set-3. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CJA09902a
      CJA09902b
    Corresponding_transcript: CJA09902a.1
      CJA09902b.1
    Other_sequence (78)
  Experimental_info: Expr_pattern: Expr1087847
    Microarray_results: GPL14145_CJA02011_179-238_0.913_2_C
      GPL14145_CJA02011_263-322_0.922_1_B
      GPL14145_CJA09902_61-120_0.839_39_B
      GPL14145_CJA09902_768-827_0.906_9_A
  Remark: [190208 pad] The CGC name Cjp-set-3 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [210528 pad] The CGC name Cjp-set-3 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene