WormBase Tree Display for Gene: WBGene00129709

WBGene00129709 SMap: S_parent: Sequence: Cjap.Contig10670
  Identity: Version: 5
    Name: CGC_name: Cjp-rev-3.3 From_analysis: Inferred_from_orthology
      Sequence_name: CJA10505
      Molecular_name: CJA10505
        CJA10505.1
        JA50857
      Public_name: Cjp-rev-3.3
    Species: Caenorhabditis japonica
    History: Version_change: 1 29 Aug 2008 14:34:22 WBPerson4055 Event: Imported: NGASP import
        2 29 Jul 2011 11:13:37 WBPerson4055 Event: Imported: Augustus import
        3 08 May 2019 10:09:27 WBPerson1983 Name_change: CGC_name: Cjp-rev-3.2
        4 28 May 2021 19:05:20 WBPerson1983 Name_change: CGC_name: Removed
        5 28 Jul 2021 11:12:29 WBPerson1983 Name_change: CGC_name: Cjp-rev-3.3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rev
    RNASeq_FPKM: WBls:0000004 4.85487 From_analysis: RNASeq.japonica.WBls:0000004.control_mean
            RNASeq.japonica.WBls:0000004.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 4.96767 From_analysis: RNASeq.japonica.WBls:0000027.control_mean
            RNASeq.japonica.WBls:0000027.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 2.59614 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
        3.94116 From_analysis: RNASeq.japonica.WBls:0000038.control_mean
            RNASeq.japonica.WBls:0000038.control_median
        5.28619 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
      WBls:0000041 0.940638 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        0.999964 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        1.26774 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        2.55475 From_analysis: RNASeq.japonica.WBls:0000041.control_mean
        2.61413 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
        2.66971 From_analysis: RNASeq.japonica.WBls:0000041.control_median
        2.7253 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        3.18845 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        3.82245 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        4.8793 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
      WBls:0000101 2.7253 From_analysis: RNASeq.japonica.total_over_all_stages.control_median
        2.93407 From_analysis: RNASeq.japonica.total_over_all_stages.control_mean
    GO_annotation: 00195031
      00195032
      00195033
      00195034
      00195035
      00195036
      00195037
    Ortholog (32)
    Paralog: WBGene00120717 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00123417 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00131564 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00176432 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00184813 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00207503 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00217799 Caenorhabditis japonica From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable DNA binding activity; DNA-directed DNA polymerase activity; and nucleotide binding activity. Predicted to be involved in translesion synthesis. Predicted to be part of zeta DNA polymerase complex. Is an ortholog of C. elegans rev-3. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CJA10505
    Corresponding_transcript: CJA10505.1
    Other_sequence: Dviv_isotig20047
      CBC04031_1
      FK803421.1
      FK809426.1
      Oden_isotig26473
  Experimental_info: Expr_pattern: Expr1073892
      Expr1077512
    Microarray_results: GPL14145_CJA10505_1477-1536_0.942_1_A
      GPL14145_CJA10505_1484-1543_0.941_2_B
      GPL14145_CJA10505_1546-1605_0.937_3_C
      GPL14145_CJA20860_597-656_0.936_1_A
  Remark: [210528 pad] The CGC name Cjp-rev-3.2 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene