WormBase Tree Display for Gene: WBGene00134453

WBGene00134453 SMap: S_parent: Sequence: Cjap.Contig16807
  Identity: Version: 8
    Name: CGC_name: Cjp-fem-1.1 From_analysis: Inferred_from_orthology
      Sequence_name: CJA15249
      Molecular_name: CJA15249
        CJA15249.1
        JA30427
        CJA15249.2
      Other_name: Cjp-fem-1 From_analysis: Inferred_from_orthology
      Public_name: Cjp-fem-1.1
    Species: Caenorhabditis japonica
    History: Version_change: 1 29 Aug 2008 14:34:23 WBPerson4055 Event: Imported: from NGASP
              Name_change: CGC_name: Cjp-fem-1
        2 27 Jan 2009 15:19:29 WBPerson4055 Name_change: CGC_name: Removed
        3 29 Jul 2011 11:13:38 WBPerson4055 Event: Imported: Augustus import
        4 20 Mar 2018 10:26:13 WBPerson4025 Name_change: CGC_name: Cjp-fem-1.1
        5 08 May 2019 10:09:24 WBPerson1983 Name_change: CGC_name: Cjp-fem-1
                Other_name: Cjp-fem-1.1
        6 04 Feb 2020 15:43:57 WBPerson1983 Name_change: CGC_name: Cjp-fem-1.1
                Other_name: Cjp-fem-1
        7 04 Jun 2020 14:38:22 WBPerson1983 Name_change: CGC_name: Removed
        8 28 May 2021 19:05:19 WBPerson1983 Name_change: CGC_name: Cjp-fem-1.1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: fem
    RNASeq_FPKM: WBls:0000004 11.9317 From_analysis: RNASeq.japonica.WBls:0000004.control_mean
            RNASeq.japonica.WBls:0000004.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 9.00314 From_analysis: RNASeq.japonica.WBls:0000027.control_mean
            RNASeq.japonica.WBls:0000027.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 6.4479 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
        7.44203 From_analysis: RNASeq.japonica.WBls:0000038.control_mean
            RNASeq.japonica.WBls:0000038.control_median
        8.43616 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
      WBls:0000041 10.1095 From_analysis: RNASeq.japonica.WBls:0000041.control_mean
        11.1453 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        11.8232 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        11.8256 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        8.33561 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        9.24832 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
        9.25113 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        9.49338 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
        9.62358 From_analysis: RNASeq.japonica.WBls:0000041.control_median
        9.75377 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
      WBls:0000101 8.97655 From_analysis: RNASeq.japonica.total_over_all_stages.control_mean
        9.25113 From_analysis: RNASeq.japonica.total_over_all_stages.control_median
    Ortholog (29)
    Paralog: WBGene00211263 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00127515 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00134962 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00176686 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00212828 Caenorhabditis japonica From_analysis: WormBase-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Ankyrin repeat; Ankyrin repeat-containing domain superfamily; and Tetratricopeptide-like helical domain superfamily. Is an ortholog of C. elegans fem-1. In C. elegans, fem-1 is involved in several processes, including proteasome-mediated ubiquitin-dependent protein catabolic process; regulation of germ cell proliferation; and sex determination. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CJA15249
    Corresponding_transcript: CJA15249.1
      CJA15249.2
    Other_sequence: MA03200
      MA03149
      JI168154.1
      CBC17707_1
      Oden_contig21629
      CR03385
      PT02248
      CRC04185_1
  Experimental_info: Expr_pattern: Expr1085057
      Expr1089460
    Microarray_results: GPL14145_CJA15249_1030-1089_0.891_17_B
      GPL14145_CJA15249_192-251_0.902_14_A
      GPL14145_CJA15249_759-818_0.924_2_C
      GPL14145_CJA21114_454-513_0.910_7_C
      GPL14145_CJA21114_554-613_0.945_2_B
      GPL14145_CJA21114_718-777_0.951_1_A
  Remark: [200603 pad] The CGC name Cjp-fem-1.1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene