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WormBase Tree Display for Gene: WBGene00136139

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Name Class

WBGene00136139SMapS_parentSequenceCjap.Contig17605
IdentityVersion9
NameCGC_nameCjp-xrn-2From_analysisInferred_from_orthology
Sequence_nameCJA16935
Molecular_nameCJA16935
CJA16935.1
JA02517
Other_nameCjp-xrn-2.1From_analysisInferred_from_orthology
Public_nameCjp-xrn-2
SpeciesCaenorhabditis japonica
HistoryVersion_change129 Aug 2008 14:34:23WBPerson4055EventImportedfrom NGASP
Name_changeCGC_nameCjp-xrn-2
227 Jan 2009 15:19:29WBPerson4055Name_changeCGC_nameRemoved
329 Jul 2011 11:13:38WBPerson4055EventImportedAugustus import
420 Mar 2018 10:26:11WBPerson4025Name_changeCGC_nameCjp-xrn-2
508 Feb 2019 15:42:27WBPerson1983Name_changeCGC_nameCjp-xrn-2.1
Other_nameCjp-xrn-2
601 Oct 2019 10:47:49WBPerson1983Name_changeCGC_nameRemoved
727 Nov 2019 12:48:14WBPerson1983Name_changeCGC_nameCjp-xrn-2
804 Feb 2020 15:43:57WBPerson1983Name_changeCGC_nameCjp-xrn-2.1
Other_nameCjp-xrn-2
928 Jul 2021 11:12:28WBPerson1983Name_changeCGC_nameCjp-xrn-2
Other_nameCjp-xrn-2.1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classxrn
RNASeq_FPKMWBls:000000452.3615From_analysisRNASeq.japonica.WBls:0000004.control_mean
RNASeq.japonica.WBls:0000004.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002742.5899From_analysisRNASeq.japonica.WBls:0000027.control_mean
RNASeq.japonica.WBls:0000027.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003835.9942From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
38.1198From_analysisRNASeq.japonica.WBls:0000038.control_mean
RNASeq.japonica.WBls:0000038.control_median
40.2454From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004135.3456From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
35.623From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
36.888From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
39.6034From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
46.5243From_analysisRNASeq.japonica.WBls:0000041.control_median
53.4452From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
55.292From_analysisRNASeq.japonica.WBls:0000041.control_mean
76.2484From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
76.9177From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
88.2643From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
WBls:000010140.2454From_analysisRNASeq.japonica.total_over_all_stages.control_median
47.1944From_analysisRNASeq.japonica.total_over_all_stages.control_mean
Ortholog (33)
ParalogWBGene00176386Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00131647Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00180440Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00206569Caenorhabditis japonicaFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Xrn1, helical domain; 5'-3' exoribonuclease; and Xrn1 helical domain. Is an ortholog of C. elegans xrn-2. In C. elegans, xrn-2 is involved in several processes, including miRNA catabolic process; negative regulation of miRNA-mediated gene silencing; and regulation of vulval development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCJA16935
Corresponding_transcriptCJA16935.1
Other_sequence (22)
Experimental_infoExpr_patternExpr1080204
Expr1080237
Microarray_resultsGPL14145_CJA16935_833-892_0.956_1_A
GPL14145_CJA27808_258-317_0.915_1_A
Remark[191001 pad] The CGC name Cjp-xrn-2.1 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene