WormBase Tree Display for Gene: WBGene00136396

WBGene00136396 SMap: S_parent: Sequence: Cjap.Contig2995
  Identity: Version: 3
    Name: CGC_name: Cjp-vps-52 From_analysis: Inferred_from_orthology
      Sequence_name: CJA17193
      Molecular_name: CJA17193a
        CJA17193a.1
        JA50116
        CJA17193b
        JA46009
        CJA17193b.1
      Other_name: Cjp-tag-197 From_analysis: Inferred_from_orthology
      Public_name: Cjp-vps-52
    Species: Caenorhabditis japonica
    History: Version_change: 1 29 Aug 2008 14:34:23 WBPerson4055 Event: Imported: from NGASP
              Name_change: CGC_name: Cjp-tag-197
        2 04 Jan 2010 16:38:10 WBPerson2970 Name_change: Other_name: Cjp-tag-197
        3 29 Jul 2011 11:13:38 WBPerson4055 Event: Imported: Augustus import
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: vps
    RNASeq_FPKM: WBls:0000004 20.0113 From_analysis: RNASeq.japonica.WBls:0000004.control_mean
            RNASeq.japonica.WBls:0000004.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 11.2042 From_analysis: RNASeq.japonica.WBls:0000027.control_mean
            RNASeq.japonica.WBls:0000027.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 11.1459 From_analysis: RNASeq.japonica.WBls:0000038.control_mean
            RNASeq.japonica.WBls:0000038.control_median
        12.9519 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
        9.33998 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
      WBls:0000041 11.1333 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        11.1351 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        12.2028 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        12.4069 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
        15.6846 From_analysis: RNASeq.japonica.WBls:0000041.control_median
        16.4702 From_analysis: RNASeq.japonica.WBls:0000041.control_mean
        18.9623 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
        20.0167 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        22.845 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        23.0599 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
      WBls:0000101 12.4069 From_analysis: RNASeq.japonica.total_over_all_stages.control_median
        14.2515 From_analysis: RNASeq.japonica.total_over_all_stages.control_mean
    Ortholog (35)
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Vps52 / Sac2 family and Vps52. Is an ortholog of C. elegans vps-52. In C. elegans, vps-52 is involved in negative regulation of dense core granule transport; positive regulation of dense core granule transport; and positive regulation of locomotion involved in locomotory behavior. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CJA17193a
      CJA17193b
    Corresponding_transcript: CJA17193a.1
      CJA17193b.1
    Other_sequence (16)
  Experimental_info: Expr_pattern: Expr1074286
    Microarray_results: GPL14145_CJA17193_1544-1603_0.748_173_C
      GPL14145_CJA17193_1806-1865_0.939_5_A
      GPL14145_CJA17193_1914-1973_0.922_14_B
  Method: Gene