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WormBase Tree Display for Gene: WBGene00137798

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Name Class

WBGene00137798SMapS_parentSequenceCjap.Contig1284
IdentityVersion3
NameCGC_nameCjp-rrbs-1From_analysisInferred_from_orthology
Sequence_nameCJA18594
Molecular_nameCJA18594
CJA18594.1
JA01047
Public_nameCjp-rrbs-1
SpeciesCaenorhabditis japonica
HistoryVersion_change129 Aug 2008 14:34:23WBPerson4055EventImportedNGASP import
229 Jul 2011 11:13:38WBPerson4055EventImportedAugustus import
320 Mar 2018 10:26:12WBPerson4025Name_changeCGC_nameCjp-rrbs-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrrbs
RNASeq_FPKMWBls:000000498.6866From_analysisRNASeq.japonica.WBls:0000004.control_mean
RNASeq.japonica.WBls:0000004.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002790.4206From_analysisRNASeq.japonica.WBls:0000027.control_mean
RNASeq.japonica.WBls:0000027.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003854.6904From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
55.8871From_analysisRNASeq.japonica.WBls:0000038.control_mean
RNASeq.japonica.WBls:0000038.control_median
57.0837From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:0000041102.385From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
109.508From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
31.9851From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
33.2929From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
36.2694From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
39.7938From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
57.2806From_analysisRNASeq.japonica.WBls:0000041.control_median
65.6742From_analysisRNASeq.japonica.WBls:0000041.control_mean
74.7674From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
97.3921From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
WBls:000010157.0837From_analysisRNASeq.japonica.total_over_all_stages.control_median
63.5596From_analysisRNASeq.japonica.total_over_all_stages.control_mean
GO_annotation00201392
00201393
OrthologWBGene00007617Caenorhabditis elegansFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00027255Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00071529Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00164329Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00142529Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00222494Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g1121Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g10315Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g5407Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g2686Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g12010Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g10625Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g6227Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g10551Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g23539Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g24651Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g4590Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00002.g198Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_08863.g21746Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-rrbs-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g19875Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00985.g17321Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_22356Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_017509Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g04224Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g12508Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50360210Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g16523Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00239991Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00276780Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00260893Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00285011Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00207286Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in ribosome biogenesis. Predicted to be located in nucleus. Is an ortholog of C. elegans rrbs-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCJA18594
Corresponding_transcriptCJA18594.1
Other_sequenceOden_isotig07632
Tcol_isotig09563
FK808896.1
CBC01777_1
FC542815.1
Tcir_isotig00757
Oden_isotig07627
Tcol_isotig09564
EX563860.1
Acan_isotig10813
Tcir_isotig19762
Name_isotig05347
Oden_isotig07633
TS00868
Tcir_isotig00756
ACC37318_1
TSC00407_1
Oden_isotig07631
MH00667
PEC00195_1
HBC04756_1
Oden_isotig07626
PE00158
ES568088.1
Oden_isotig07629
Dviv_isotig09971
EX543189.1
Oden_isotig07630
GE625310.1
TSC13330_1
Oden_isotig07628
CRC01173_1
Tcir_isotig20438
EX547193.1
Tcol_isotig11466
ACC15625_1
Oden_isotig07625
Hbac_isotig01907
PPC02842_1
PPC02967_1
ES411388.1
ACC05380_1
Dviv_isotig09970
ES565651.1
CJC01662_1
CR11346
Tcir_isotig00755
Oden_isotig07634
CR02465
EX500172.1
MHC01430_1
Experimental_infoExpr_patternExpr1089635
Microarray_resultsGPL14145_CJA18594_303-362_0.879_30_C
GPL14145_CJA18594_680-739_0.918_11_B
GPL14145_CJA18594_740-799_0.943_1_A
MethodGene