WormBase Tree Display for Gene: WBGene00139293

WBGene00139293 SMap: S_parent: Sequence: Cbre_Contig157
  Identity: Version: 2
    Name: CGC_name: Cbn-agt-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBN00568
      Molecular_name: CBN00568
        CBN00568.1
        CN27623
      Public_name: Cbn-agt-1
    Species: Caenorhabditis brenneri
    History: Version_change: 1 01 Oct 2008 13:29:50 WBPerson4055 Event: Imported: from NGASP
        2 20 Mar 2018 10:26:11 WBPerson4025 Name_change: CGC_name: Cbn-agt-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: agt
    RNASeq_FPKM: WBls:0000002 10.3989 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
        11.455 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
        15.3672 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
        15.9223 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
        19.824 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
            RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
        2.87821 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
        5.67557 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
        9.07997 From_analysis: RNASeq.brenneri.WBls:0000002.control_mean
        9.27855 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
        9.83873 From_analysis: RNASeq.brenneri.WBls:0000002.control_median
      WBls:0000004 14.1487 From_analysis: RNASeq.brenneri.WBls:0000004.control_mean
            RNASeq.brenneri.WBls:0000004.control_median
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
        28.2973 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
      WBls:0000024 0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
        23.022 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
        27.3043 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
        32.7994 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
        53.9065 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
        79.0026 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
      WBls:0000038 61.6877 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
        63.137 From_analysis: RNASeq.brenneri.WBls:0000038.control_mean
            RNASeq.brenneri.WBls:0000038.control_median
        64.5863 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
      WBls:0000041 108.532 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191968
        111.538 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191969
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191965
            RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX103657
        38.3684 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX103654
        39.4886 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100778
        42.376 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100779
        43.41 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100773
        48.5292 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100776
        50.2325 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100780
        53.286 From_analysis: RNASeq.brenneri.WBls:0000041.control_median
        56.3396 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100777
        57.7874 From_analysis: RNASeq.brenneri.WBls:0000041.control_mean
        63.7724 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100775
        74.2572 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191966
        80.0533 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191970
        80.59 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191967
        87.1116 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100774
      WBls:0000101 37.741 From_analysis: RNASeq.brenneri.total_over_all_stages.control_mean
        38.3684 From_analysis: RNASeq.brenneri.total_over_all_stages.control_median
    GO_annotation: 00202618
      00202619
    Ortholog: WBGene00000093 Caenorhabditis elegans From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00024971 Caenorhabditis briggsae From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00062761 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00074741 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00083557 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00126056 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      CBOVI.g8737 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP26.g13687 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g13864 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g7000 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g5268 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g14436 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g906 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g4372 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g2402 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_06793.g20487 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_13362.g24193 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-agt-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold589.g5042 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00422.g11137 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_16018 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_014536 Caenorhabditis remanei From_analysis: WormBase-Compara
      Sp34_40137910 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g12283 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable catalytic activity. Predicted to be involved in DNA repair. Is an ortholog of C. elegans agt-1. In C. elegans, agt-1 is involved in DNA dealkylation involved in DNA repair. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBN00568
    Corresponding_CDS_history: CBN00568:np197
    Corresponding_transcript: CBN00568.1
    Other_sequence: CBC07082_1
  Experimental_info: Microarray_results: GPL14142_CBN00568_76-135_0.912_22_C
      GPL14142_CBN00568_119-178_0.933_7_B
      GPL14142_CBN00568_467-526_0.964_1_A
  Method: Gene