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WormBase Tree Display for Gene: WBGene00142179

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Name Class

WBGene00142179SMapS_parentSequenceCbre_Contig40
IdentityVersion1
NameCGC_nameCbn-tni-3From_analysisInferred_from_orthology
Sequence_nameCBN03454
Molecular_nameCBN03454
CBN03454.1
CN25587
Other_nameCBN03454
Public_nameCbn-tni-3
SpeciesCaenorhabditis brenneri
HistoryVersion_change130 Oct 2008 10:39:28WBPerson4055EventImportedfrom NGASP
Name_changeCGC_nameCbn-tni-3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtni
RNASeq_FPKMWBls:000000211.5433From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
11.673From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
15.7993From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
18.9499From_analysisRNASeq.brenneri.WBls:0000002.control_median
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
20.7687From_analysisRNASeq.brenneri.WBls:0000002.control_mean
22.1004From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
26.7167From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
27.4972From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
29.6852From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
62.6722From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
WBls:00000040.94269From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
1.88538From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
WBls:0000024168.82From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
204.243From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
215.405From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
222.818From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
275.395From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
WBls:0000038149.438From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
167.154From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
184.871From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:0000041120.315From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100773
128.333From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX103654
152.682From_analysisRNASeq.brenneri.WBls:0000041.control_median
177.032From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100774
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191965
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX103657
212.626From_analysisRNASeq.brenneri.WBls:0000041.control_mean
265.233From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100778
275.812From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100777
296.468From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100780
368.154From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191969
377.098From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100779
38.5139From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191966
488.466From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191970
50.55From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191967
624.315From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191968
93.2879From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100775
98.4342From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100776
WBls:0000101127.287From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
50.55From_analysisRNASeq.brenneri.total_over_all_stages.control_median
GO_annotation00204937
OrthologWBGene00006585Caenorhabditis elegansFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00042489Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00056523Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00099181Pristionchus pacificusFrom_analysisOMA
WBGene00127002Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
CBOVI.g3025Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g4785Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g7643Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g5694Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g19279Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g24974Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g9622Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g19859Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g3963Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g19331Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00359.g9706Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-tni-3Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold408.g971Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00956.g17081Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_02847Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_019821Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g10392Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g19272Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50375600Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00099182Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00109023Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00227801Brugia malayiFrom_analysisWormBase-Compara
chrV_pilon.g17268Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00242556Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00272388Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00277836Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00267557Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00291450Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00158790Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
WBGene00150453Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
WBGene00161700Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
WBGene00154374Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
Structured_descriptionAutomated_descriptionPredicted to be part of troponin complex. Is an ortholog of C. elegans tni-3. In C. elegans, tni-3 is involved in egg-laying behavior; muscle contraction; and post-embryonic body morphogenesis.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN03454
Corresponding_transcriptCBN03454.1
Other_sequenceCBC03555_1
TSC12848_1
MP00517
MHC01951_1
CR01537
MJ00690
FG589377.1
CJC02975_1
EX502278.1
MA00549
BE238898.1
Tcir_isotig10504
Name_isotig03106
Oden_isotig17885
TMC01431_1
ES272893.1
AS04464
MH02705
FG348573.1
ES568426.1
MA00591
PP00439
MAC00770_1
MI02495
CRC01191_1
DN190967.1
BE239068.1
MAC01542_1
TM01730
MI04352
MJC01442_2
FG580277.1
AAC00594_1
FG581827.1
MIC04234_1
RS10625
PP00909
MH09322
PVC02253_1
MPC00040_1
FG349247.1
ASC01154_1
RSC00997_1
MJ00609
Experimental_infoMicroarray_resultsGPL14142_CBN03454_239-298_0.882_15_C
GPL14142_CBN03454_419-478_0.925_2_B
GPL14142_CBN03454_538-597_0.931_1_A
MethodGene