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WormBase Tree Display for Gene: WBGene00153735

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Name Class

WBGene00153735SMapS_parentSequenceCbre_Contig3
IdentityVersion2
NameCGC_nameCbn-lron-12From_analysisInferred_from_orthology
Sequence_nameCBN15010
Molecular_nameCBN15010
CBN15010.1
CN30333
Public_nameCbn-lron-12
SpeciesCaenorhabditis brenneri
HistoryVersion_change101 Oct 2008 13:29:51WBPerson4055EventImportedfrom NGASP
209 Dec 2011 15:52:14WBPerson2970Name_changeCGC_nameCbn-lron-12
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlron
RNASeq_FPKMWBls:00000020.14876From_analysisRNASeq.brenneri.WBls:0000002.control_mean
0.512832From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
0.974764From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
RNASeq.brenneri.WBls:0000002.control_median
WBls:000000411.5308From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
20.3615From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
2.70008From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:000002410.5588From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
11.5284From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
11.9104From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
20.7934From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
8.24826From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
WBls:00000382.03263From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
2.76639From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
3.50015From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:00000410.508121From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100776
0.621522From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191967
0.685364From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191966
1.05513From_analysisRNASeq.brenneri.WBls:0000041.control_median
1.4249From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100777
1.57653From_analysisRNASeq.brenneri.WBls:0000041.control_mean
1.84128From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100773
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100774
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100775
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100778
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100779
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX103657
2.41526From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100780
2.5242From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX103654
2.6731From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191970
3.10491From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191968
3.51714From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191969
5.90866From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191965
WBls:00001010.512832From_analysisRNASeq.brenneri.total_over_all_stages.control_median
1.78408From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
OrthologWBGene00013542Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00041443Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00061879Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00105704Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WBGene00132210Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
CBOVI.g5573Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g13054Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP28.g6656Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g1437Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g23753Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g1272Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP39.g4220Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
Cang_2012_03_13_05836.g19875Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-lron-12Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g14514Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_02289.g25820Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_24280Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_008326Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g04840Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g22330Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30010500Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00041445Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00233839Brugia malayiFrom_analysisWormBase-Compara
chrIII_pilon.g9143Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00246148Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00277510Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00263530Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00289224Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00144015Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00152120Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00159774Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00162955Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00191814Caenorhabditis brenneriFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Leucine-rich repeat domain superfamily; BspA type Leucine rich repeat region; and BspA type Leucine rich repeat region (6 copies). Is an ortholog of C. elegans lron-12.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN15010
Corresponding_CDS_historyCBN15010:np197
Corresponding_transcriptCBN15010.1
Other_sequenceOden_isotig21048
Acan_isotig10454
Experimental_infoMicroarray_resultsGPL14142_CBN15010_445-504_0.878_19_C
GPL14142_CBN15010_738-797_0.648_143_A
GPL14142_CBN15010_905-964_0.945_1_B
MethodGene