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WormBase Tree Display for Gene: WBGene00156564

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Name Class

WBGene00156564SMapS_parentSequenceCbre_Contig165
IdentityVersion1
NameCGC_nameCbn-rack-1From_analysisInferred_from_orthology
Sequence_nameCBN17839
Molecular_nameCBN17839
CBN17839.1
CN15366
Other_nameCBN17839
Public_nameCbn-rack-1
SpeciesCaenorhabditis brenneri
HistoryVersion_change130 Oct 2008 10:39:28WBPerson4055EventImportedfrom NGASP
Name_changeCGC_nameCbn-rack-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrack
RNASeq_FPKMWBls:00000020From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
345.616From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
437.218From_analysisRNASeq.brenneri.WBls:0000002.control_mean
456.25From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
504.251From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
543.589From_analysisRNASeq.brenneri.WBls:0000002.control_median
582.928From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
585.779From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
590.968From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
591.645From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
714.739From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
WBls:0000004107.142From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
214.283From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
2553.36From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
2600.81From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
3030.68From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
3502.13From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
3773.6From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
WBls:00000381515.52From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
1557.69From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
1599.85From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:00000411037.76From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100777
1085.24From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100780
1144.18From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100779
1414.17From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100778
1427.98From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191970
1564.15From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191968
1586.81From_analysisRNASeq.brenneri.WBls:0000041.control_median
1609.47From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191969
1709.66From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191966
1852.55From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191967
1902.28From_analysisRNASeq.brenneri.WBls:0000041.control_mean
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191965
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX103657
3273.01From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX103654
3385.11From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100773
3466.01From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100776
3588.85From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100775
3878.37From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100774
WBls:00001011037.76From_analysisRNASeq.brenneri.total_over_all_stages.control_median
1230.27From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
OrthologWBGene00010556Caenorhabditis elegansFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00026271Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00065659Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00074460Caenorhabditis remaneiFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00089880Pristionchus pacificusFrom_analysisOMA
WBGene00125672Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
CBOVI.g8428Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g2912Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g11364Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g2528Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g2533Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g22088Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g20131Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g2317Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g1785Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g14464Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g13094Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_18440.g25969Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-rack-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold585.g4783Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00074.g3450Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_16422Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_014366Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g02858Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g20669Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40258700Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00096829Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00233949Brugia malayiFrom_analysisWormBase-Compara
chrIV_pilon.g11530Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00241435Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00262357Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00291681Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00141552Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00141762Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00141799Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00141853Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00143646Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00143835Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00144609Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00146046Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00147898Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00151271Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00151649Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00152459Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00153438Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00158878Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00163257Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00194475Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00156686Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00159270Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00160712Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00161511Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00175070Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00191475Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00191497Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00191707Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00193835Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00194432Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: WD domain, G-beta repeat; WD40-repeat-containing domain superfamily; G-protein beta WD-40 repeat; WD40/YVTN repeat-like-containing domain superfamily; and WD40 repeat. Is an ortholog of C. elegans rack-1. In C. elegans, rack-1 is involved in several processes, including antifungal innate immune response; cytoskeleton-dependent cytokinesis; and motor neuron axon guidance.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN17839
Corresponding_transcriptCBN17839.1
Other_sequenceCBC00164_2
CBC04699_1
CBC10545_1
CBC10701_1
CBC15382_1
CBC16873_1
FK800085.1
ALC00664_1
FK806831.1
HBC00722_2
ES413121.1
GR10466
CRC00098_1
HS00599
FF678795.1
CD374711.1
TLC00176_1
GP02304
EX010777.1
AE03401
DA00244
FC815342.1
TMC00228_1
FG977179.1
FE911238.1
CRC10462_1
EX015113.1
MH08088
EX007436.1
ACC04044_1
AW453469.1
DN557902.1
CR10401
HBC00722_1
EE724206.1
TSC10108_1
EX009641.1
NB09560
CR02942
GT737605.1
BU087153.1
EX912341.1
DN190668.1
PT00594
PT04718
MIC00351_1
ES413058.1
ES743136.1
FD517559.1
CJC00611_1
ES411346.1
TSC01406_1
PPC02574_1
AW355762.1
DN556887.1
ES741000.1
MHC12212_1
BE209005.1
DN557838.1
EX008708.1
JO467712.1
CR06890
AS03219
BU666176.1
BM00042
EX543104.1
MJ00370
XIC03540_1
Tcol_isotig02334
EX916001.1
AS03997
CK854888.1
FE916515.1
MPC00273_1
MC02842
ES740176.1
Acan_isotig06222
BM01567
NB08592
ES740367.1
ES411196.1
EX552549.1
FF678485.1
CR08859
PEC00022_1
Tcol_isotig02333
EX009697.1
EX542859.1
Acan_isotig00761
ES409238.1
CR10295
JI174323.1
BF718919.1
BQ579840.1
BF727596.1
PTC02722_1
EX550082.1
AE00114
EX536197.1
AE04723
ES740567.1
GR978905.1
AI151595.1
FE918827.1
AE02005
CR04039
OOC02927_1
AI381123.1
EX013857.1
FG619089.1
GR18852
EX007707.1
TM00636
BU586449.1
ES413109.1
ES742555.1
ES744251.1
BE638391.1
CR06180
AW208355.1
HGC00326_1
HG02510
CR06931
JK315267.1
MHC11811_1
HG02319
EX010235.1
GP00390
CGC00492_1
EX556554.1
Acan_isotig06221
HSC00149_1
JI625615.1
EX008869.1
ES410597.1
MI01297
Tcol_isotig02335
PT00777
EX010715.1
DN556723.1
AYC00642_1
EX009424.1
EX540456.1
MIC05205_1
EX562200.1
LSC00266_1
GR19745
ES741246.1
EE724208.1
FE918168.1
Dviv_isotig18275
CR04532
HBC14813_1
NB07663
EX015047.1
CR09228
Hbac_isotig02528
PP00077
CRC02717_1
EX012046.1
PE00253
MA02265
OVC00165_1
ES413851.1
PT03917
EX548415.1
EX014073.1
CGC01053_1
GR367663.1
AI151602.1
PTC04074_1
CRC00449_1
EX014219.1
MJC03218_1
EX012811.1
FK801206.1
EX007333.1
PP00614
SR00950
SRC00480_1
EX913135.1
OVC08842_1
ES414310.1
NB09583
BMC18446_1
EX912517.1
CR11013
GR977339.1
GRC03430_1
BF400416.1
AM743507.1
DI00127
TSC06308_1
MA00318
JI217566.1
PSC00766_2
LSC00133_1
GO249171.1
AS13022
CR02859
AS16600
ZPC00080_1
BU088145.1
MI01882
EX560518.1
JK315974.1
SS00749
MH02655
ES741451.1
AI539978.1
TDC03282_1
ES408690.1
GPC01435_1
Oden_isotig20226
ES740689.1
AS06126
HGC05411_1
EX012569.1
EE724188.1
CR08479
FE911485.1
FE910542.1
DN557074.1
EX910252.1
FE914705.1
FE913689.1
FG619689.1
CJC16266_1
MCC00127_1
MA00158
Acan_isotig00762
ES561806.1
EE724160.1
MJ02562
FK809632.1
FF680155.1
EE724207.1
XI02808
ES409280.1
FF680410.1
FG588776.1
GR367581.1
PTC03199_1
MIC08578_1
AW453473.1
EX007692.1
MAC00580_1
GR18851
GR11869
GR18109
NAC00886_1
GR979300.1
MHC11412_1
FG974328.1
GR19746
WBC01694_1
FK809359.1
ACC04044_2
EX009939.1
JK315276.1
AS06190
GR18194
HCC06185_1
ES408818.1
SR03710
ES412966.1
EX546636.1
FE911312.1
SC00152
EG025527.1
ES409271.1
DAC00545_1
FK805229.1
BMC00472_1
JK316004.1
EX012716.1
PPC00022_1
ES741182.1
FG979783.1
EX547114.1
EX006962.1
CJC06384_1
GW408236.1
PSC00766_1
GRC03430_2
EX010911.1
CSC01813_1
BU666291.1
HC00586
CD455442.1
BE132536.1
FE919522.1
JI482024.1
MI06775
EE724209.1
EE724161.1
EE724199.1
EX007698.1
NB07546
NBC01011_1
ES410968.1
SFC00032_1
HBC12885_1
MCC02540_1
ES413700.1
MP00013
JI212069.1
GT570969.1
ES409035.1
FE918410.1
ES740764.1
Name_isotig02120
EX914549.1
GW408025.1
MC01360
ES411991.1
ASC00769_1
FE910652.1
EX912559.1
DIC00278_1
MJC01631_1
ES272963.1
CR03074
PE00240
Acan_isotig00763
ES413805.1
MH02666
CRC05015_1
ACC10059_1
BXC00647_1
EX913356.1
Acan_isotig00764
CD455532.1
EX014799.1
AE00319
AA294113.1
EX008064.1
Acan_isotig23223
CR09609
CA840694.1
CRC05085_1
JK314917.1
ES739368.1
Dviv_isotig18276
FK808215.1
AS05096
CJC00756_2
AA293984.1
GT737570.1
EX914068.1
MAC02806_1
MP00429
AS09433
AS00315
FC810373.1
AYC00642_2
EX916094.1
EX544837.1
ZP00040
FC813196.1
ES880562.1
ES412513.1
EX913162.1
PPC07291_1
EX010956.1
HG03427
ES410783.1
AE01027
DN557656.1
EE724159.1
ES412313.1
BF599134.1
SSC05814_1
ES566792.1
CR10400
Tcir_isotig07034
EX011518.1
EE724158.1
ES562893.1
WBC00589_1
MHC00404_1
AW288220.1
CRC08165_1
PT02827
CK850200.1
JK315834.1
Experimental_infoMicroarray_resultsGPL14142_CBN17839_393-452_0.841_17_C
GPL14142_CBN17839_653-712_0.914_7_B
GPL14142_CBN17839_825-884_0.943_1_A
MethodGene