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WormBase Tree Display for Gene: WBGene00162148

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Name Class

WBGene00162148SMapS_parentSequenceCbre_Contig716
IdentityVersion2
NameCGC_nameCbn-arc-1.1From_analysisInferred_from_orthology
Sequence_nameCBN23423
Molecular_nameCBN23423
CBN23423.1
CN06945
Other_nameCBN23423
Cbn-arc-1From_analysisInferred_from_orthology
Public_nameCbn-arc-1.1
SpeciesCaenorhabditis brenneri
HistoryVersion_change130 Oct 2008 10:39:28WBPerson4055EventImportedfrom NGASP
Name_changeCGC_nameCbn-arc-1
220 Mar 2018 10:26:13WBPerson4025Name_changeCGC_nameCbn-arc-1.1
Other_nameCbn-arc-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classarc
RNASeq_FPKMWBls:00000020.438987From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
1.58604From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
1.62306From_analysisRNASeq.brenneri.WBls:0000002.control_mean
1.65866From_analysisRNASeq.brenneri.WBls:0000002.control_median
1.73128From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
1.76375From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
1.8869From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
2.261From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
6.56268From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
WBls:00000041.92595From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
3.85189From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000241.49916From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
2.24588From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
2.38203From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
2.48961From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
3.56933From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
WBls:00000382.51127From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
3.15473From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
3.79819From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:000004110.2311From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191969
1.96718From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100777
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191965
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100778
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX103657
3.33508From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100780
3.80562From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100775
5.28834From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100776
5.52767From_analysisRNASeq.brenneri.WBls:0000041.control_mean
7.0049From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX103654
7.05224From_analysisRNASeq.brenneri.WBls:0000041.control_median
7.09957From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191968
7.36783From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100773
7.58636From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100779
8.59229From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191966
8.63695From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191970
8.66814From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100774
8.8593From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191967
WBls:00001012.51127From_analysisRNASeq.brenneri.total_over_all_stages.control_median
3.70434From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
GO_annotation00221167
00221168
00221169
OrthologWBGene00000180Caenorhabditis elegansFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00024350Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00067264Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WBGene00113643Pristionchus pacificusFrom_analysisOMA
WormBase-Compara
WBGene00126882Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
CBOVI.g6522Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g1842Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP28.g13365Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g9040Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g27151Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g22Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g21431Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g25341Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g5102Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g3195Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00105.g4468Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-arc-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g8835Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_05717.g35461Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_08485Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_003655Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g13547Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g14770Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g15553Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20186010Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00227928Brugia malayiFrom_analysisWormBase-Compara
chrII_pilon.g5566Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00248370Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00293949Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00185015Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
GeneACeDB-Compara
WBGene00139174Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00142370Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00142715Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00143973Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00145648Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00145882Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00146393Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00149601Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00151621Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00156189Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00156938Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00157727Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00157950Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00162703Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00164006Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00164232Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00164364Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00191300Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00191395Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00192053Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00192329Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00219396Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00141289Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00144097Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00144510Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00144582Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00144598Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00145307Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00145697Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00149487Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00150956Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00151093Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00152503Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00152514Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00153231Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00153528Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00153580Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00155481Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00156451Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00158167Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00159165Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00159225Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00160139Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00160735Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00161018Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00161224Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00161267Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00163010Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00164931Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00191894Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00192215Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00193543Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
Structured_descriptionAutomated_descriptionPredicted to enable GTP binding activity; GTPase activity; and zinc ion binding activity. Is an ortholog of C. elegans arc-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN23423
Corresponding_transcriptCBN23423.1
Other_sequenceTcol_isotig09182
Tcol_isotig14597
Oden_isotig15279
Tcol_isotig09183
Experimental_infoMicroarray_resultsGPL14142_CBN23423_391-450_0.572_220_C
GPL14142_CBN23423_1212-1271_0.922_2_B
GPL14142_CBN23423_1282-1341_0.940_1_A
MethodGene