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WormBase Tree Display for Gene: WBGene00162224

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Name Class

WBGene00162224SMapS_parentSequenceCbre_Contig48
IdentityVersion1
NameCGC_nameCbn-polk-1From_analysisInferred_from_orthology
Sequence_nameCBN23499
Molecular_nameCBN23499
CBN23499.1
CN19276
Other_nameCBN23499
Public_nameCbn-polk-1
SpeciesCaenorhabditis brenneri
HistoryVersion_change130 Oct 2008 10:39:28WBPerson4055EventImportedfrom NGASP
Name_changeCGC_nameCbn-polk-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpolk
RNASeq_FPKMWBls:00000020.394505From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
0.456562From_analysisRNASeq.brenneri.WBls:0000002.control_median
0.469633From_analysisRNASeq.brenneri.WBls:0000002.control_mean
0.518619From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
0.628037From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
0.6793From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
1.20409From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
1.27178From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
WBls:00000040.62258From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
1.24516From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
WBls:00000240.744417From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
1.03451From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
1.37654From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
1.83389From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
WBls:00000380.469673From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
0.861547From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
1.25342From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (16)
WBls:00001010.6793From_analysisRNASeq.brenneri.total_over_all_stages.control_median
2.25583From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
GO_annotation00221219
00221220
Ortholog (29)
ParalogWBGene00148642Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00156633Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00193461Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
Structured_descriptionAutomated_descriptionPredicted to enable damaged DNA binding activity. Predicted to be involved in DNA repair. Is an ortholog of C. elegans polk-1. In C. elegans, polk-1 is involved in embryo development; error-prone translesion synthesis; and reproduction.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN23499
Corresponding_transcriptCBN23499.1
Other_sequence (25)
Experimental_infoMicroarray_resultsGPL14142_CBN23499_428-487_0.841_45_C
GPL14142_CBN23499_532-591_0.808_72_A
GPL14142_CBN23499_711-770_0.875_26_B
MethodGene