WormBase Tree Display for Gene: WBGene00163523

WBGene00163523 SMap: S_parent: Sequence: Cbre_Contig7
  Identity: Version: 1
    Name: CGC_name: Cbn-cup-4 From_analysis: Inferred_from_orthology
      Sequence_name: CBN24798
      Molecular_name: CBN24798
        CBN24798.1
        CN07680
      Other_name: CBN24798
      Public_name: Cbn-cup-4
    Species: Caenorhabditis brenneri
    History: Version_change: 1 30 Oct 2008 10:39:28 WBPerson4055 Event: Imported: from NGASP
              Name_change: CGC_name: Cbn-cup-4
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cup
    RNASeq_FPKM: WBls:0000002 (11)
      WBls:0000004 1.45907 From_analysis: RNASeq.brenneri.WBls:0000004.control_mean
            RNASeq.brenneri.WBls:0000004.control_median
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
        2.91815 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
      WBls:0000024 10.9677 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
        13.4398 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
        3.86293 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
        7.83839 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
        8.24312 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
      WBls:0000038 16.3377 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
        18.9001 From_analysis: RNASeq.brenneri.WBls:0000038.control_mean
            RNASeq.brenneri.WBls:0000038.control_median
        21.4625 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
      WBls:0000041 (16)
      WBls:0000101 4.80713 From_analysis: RNASeq.brenneri.total_over_all_stages.control_median
        6.26897 From_analysis: RNASeq.brenneri.total_over_all_stages.control_mean
    GO_annotation: 00222294
      00222295
      00222296
      00222297
      00222298
      00222299
    Ortholog (29)
    Paralog (128)
    Structured_description: Automated_description: Predicted to enable extracellular ligand-gated monoatomic ion channel activity and transmembrane signaling receptor activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans cup-4. In C. elegans, cup-4 is involved in several processes, including determination of adult lifespan; positive regulation of egg-laying behavior; and response to caloric restriction. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBN24798
    Corresponding_transcript: CBN24798.1
    Other_sequence: JO468316.1
      JI169898.1
      Oden_isotig23439
  Experimental_info: Microarray_results: GPL14142_CBN24798_218-277_0.845_60_B
      GPL14142_CBN24798_528-587_0.899_12_A
      GPL14142_CBN24798_714-773_0.872_38_C
  Method: Gene