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WormBase Tree Display for Gene: WBGene00164181

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Name Class

WBGene00164181SMapS_parentSequenceCbre_Contig2
IdentityVersion1
NameCGC_nameCbn-dmd-4From_analysisInferred_from_orthology
Sequence_nameCBN25456
Molecular_nameCBN25456
CBN25456.1
CN18394
Other_nameCBN25456
Public_nameCbn-dmd-4
SpeciesCaenorhabditis brenneri
HistoryVersion_change130 Oct 2008 10:39:29WBPerson4055EventImportedfrom NGASP
Name_changeCGC_nameCbn-dmd-4
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classdmd
RNASeq_FPKMWBls:00000020.968545From_analysisRNASeq.brenneri.WBls:0000002.control_median
1.93709From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
2.0772From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
2.0888From_analysisRNASeq.brenneri.WBls:0000002.control_mean
3.86449From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
5.1852From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
7.82407From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
WBls:000000415.4162From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
26.5382From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
4.29421From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:000002412.0666From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
12.4534From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
13.7122From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
16.538From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
9.85899From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
WBls:000003821.2982From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
22.5937From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
23.8892From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (13)
WBls:00001011.30373From_analysisRNASeq.brenneri.total_over_all_stages.control_median
3.88354From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
GO_annotation00222846
00222847
00222848
Ortholog (15)
ParalogWBGene00145330Caenorhabditis brenneriFrom_analysisTreeFam
GeneACeDB-Compara
WBGene00164669Caenorhabditis brenneriFrom_analysisTreeFam
GeneACeDB-Compara
WBGene00146355Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00160511Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
Structured_descriptionAutomated_descriptionPredicted to enable sequence-specific DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Is an ortholog of C. elegans dmd-4. In C. elegans, dmd-4 is involved in synapse pruning.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN25456
Corresponding_transcriptCBN25456.1
Other_sequencePPC19769_1
Dviv_isotig33225
JI181126.1
Oden_isotig13313
Oden_isotig22718
Experimental_infoMicroarray_resultsGPL14142_CBN25456_89-148_0.821_60_C
GPL14142_CBN25456_419-478_0.940_6_B
GPL14142_CBN25456_656-715_0.960_1_A
MethodGene