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WormBase Tree Display for Gene: WBGene00197421

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Name Class

WBGene00197421SMapS_parentSequenceC54D2
IdentityVersion1
NameSequence_nameC54D2.10
Molecular_nameC54D2.10
Other_nameCELE_C54D2.10Accession_evidenceNDBBX284606
Public_nameC54D2.10
DB_infoDatabaseNDBlocus_tagCELE_C54D2.10
NCBIgene13221615
RefSeqproteinNR_071590.1
RNAcentralURSidURS0000353F91
SpeciesCaenorhabditis elegans
HistoryVersion_change106 Oct 2010 16:59:21WBPerson4025EventCreated
StatusLive
Gene_infoBiotypeSO:0001263
Allele (13)
RNASeq_FPKM (74)
Structured_descriptionAutomated_descriptionEnriched in neurons based on RNA-seq studies. Is affected by cep-1 and hmg-3 based on RNA-seq studies. Is affected by Oligosaccharides based on microarray studies.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_transcriptC54D2.10
Experimental_infoExpression_clusterWBPaper00045380:cep-1(gk138)_upregulated_normal
WBPaper00055013:hmg-3(bar24)_upregulated
WBPaper00062103:neuron_enriched
WBPaper00064306:Agaro-oligosaccharides_upregulated
Map_infoPositivePositive_cloneC54D2Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionX-1.05779
Remark[101006] This ncRNA gene was created from the '7K ncRNA set' in the modENCODE Integrated Analysis paper.Paper_evidenceWBPaper00037953
Accession_evidencemodENCODEncRNA_frag6007
Curator_confirmedWBPerson4025
MethodGene