WormBase Tree Display for Gene: WBGene00205581
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| WBGene00205581 | SMap | S_parent | Sequence | PPA_ChrIII | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 6 | |||||||
| Name | CGC_name | Ppa-sqv-3 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA32721 | ||||||||
| Molecular_name | PPA32721 | ||||||||
| PPA32721.1 | |||||||||
| PP53150 | |||||||||
| Other_name | UMM-S413-1.27 | Person_evidence | WBPerson606 | ||||||
| Public_name | Ppa-sqv-3 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 04 Nov 2010 10:29:00 | WBPerson4055 | Event | Imported | from Assembly 2 | ||
| 2 | 18 Nov 2010 11:54:47 | WBPerson2970 | Name_change | CGC_name | Ppa-sqv-3 | ||||
| 3 | 08 Feb 2019 15:42:29 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 08 May 2019 10:09:25 | WBPerson1983 | Name_change | CGC_name | Ppa-sqv-3 | ||||
| 5 | 28 May 2021 19:05:21 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 28 Jul 2021 11:12:29 | WBPerson1983 | Name_change | CGC_name | Ppa-sqv-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sqv | ||||||||
| RNASeq_FPKM | WBls:0000032 | 13.5434 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 13.402 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 13.5434 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| 26.6626 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00231626 | ||||||||
| 00231627 | |||||||||
| Ortholog (29) | |||||||||
| Paralog | WBGene00101435 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| WBGene00277711 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00278055 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable glycosyltransferase activity. Predicted to be involved in carbohydrate metabolic process. Is an ortholog of C. elegans sqv-3. In C. elegans, sqv-3 is involved in several processes, including egg-laying behavior; positive regulation of axon regeneration; and proteoglycan biosynthetic process. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA32721 | |||||||
| Corresponding_transcript | PPA32721.1 | ||||||||
| Other_sequence (22) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_47830 | |||||||
| GPL14372_Probes_47831 | |||||||||
| GPL14372_Probes_47832 | |||||||||
| GPL14372_Probes_47833 | |||||||||
| GPL14372_Probes_47834 | |||||||||
| Expression_cluster | WBPaper00041207:PP_dauer_up | ||||||||
| Remark | [190208 pad] The CGC name Ppa-sqv-3 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-sqv-3 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
