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WormBase Tree Display for Gene: WBGene00209379

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Name Class

WBGene00209379SMapS_parentSequenceCjap.Contig7508
IdentityVersion2
NameCGC_nameCjp-vps-29From_analysisInferred_from_orthology
Sequence_nameCJA33532
Molecular_nameCJA33532a
CJA33532a.1
JA52224
CJA33532b
JA63417
CJA33532b.1
Public_nameCjp-vps-29
SpeciesCaenorhabditis japonica
HistoryVersion_change128 Jul 2011 11:15:55WBPerson4055EventImportedAugustus import
220 Mar 2018 10:26:11WBPerson4025Name_changeCGC_nameCjp-vps-29
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvps
RNASeq_FPKMWBls:000000422.8823From_analysisRNASeq.japonica.WBls:0000004.control_mean
RNASeq.japonica.WBls:0000004.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002715.7765From_analysisRNASeq.japonica.WBls:0000027.control_mean
RNASeq.japonica.WBls:0000027.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000386.18114From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
7.91224From_analysisRNASeq.japonica.WBls:0000038.control_mean
RNASeq.japonica.WBls:0000038.control_median
9.64335From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
WBls:000004124.8099From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
31.8798From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
36.0355From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
36.6381From_analysisRNASeq.japonica.WBls:0000041.control_median
37.2407From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
50.9072From_analysisRNASeq.japonica.WBls:0000041.control_mean
5.46071From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
83.176From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
91.1517From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
97.5036From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
WBls:000010124.8099From_analysisRNASeq.japonica.total_over_all_stages.control_median
35.5186From_analysisRNASeq.japonica.total_over_all_stages.control_mean
GO_annotation00233173
00233174
Ortholog (27)
Structured_descriptionAutomated_descriptionPredicted to be involved in retrograde transport, endosome to Golgi. Predicted to be part of retromer complex. Is an ortholog of C. elegans vps-29.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCJA33532a
CJA33532b
Corresponding_transcriptCJA33532a.1
CJA33532b.1
Other_sequence (41)
MethodGene