WormBase Tree Display for Gene: WBGene00216830

WBGene00216830 SMap: S_parent: Sequence: Cjap.Contig17346
  Identity: Version: 2
    Name: CGC_name: Cjp-nca-2 From_analysis: Inferred_from_orthology
      Sequence_name: CJA40982
      Molecular_name: CJA40982a
        CJA40982a.1
        JA41334
        CJA40982b
        JA59810
        CJA40982c
        JA65503
        CJA40982b.1
        CJA40982c.1
      Public_name: Cjp-nca-2
    Species: Caenorhabditis japonica
    History: Version_change: 1 28 Jul 2011 11:15:56 WBPerson4055 Event: Imported: Augustus import
        2 20 Mar 2018 10:26:11 WBPerson4025 Name_change: CGC_name: Cjp-nca-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nca
    RNASeq_FPKM: WBls:0000004 2.03318 From_analysis: RNASeq.japonica.WBls:0000004.control_mean
            RNASeq.japonica.WBls:0000004.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 3.50037 From_analysis: RNASeq.japonica.WBls:0000027.control_mean
            RNASeq.japonica.WBls:0000027.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 1.44404 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
        1.46813 From_analysis: RNASeq.japonica.WBls:0000038.control_mean
            RNASeq.japonica.WBls:0000038.control_median
        1.49222 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
      WBls:0000041 0.11134 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        0.129307 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        0.17816 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        0.311032 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        0.312861 From_analysis: RNASeq.japonica.WBls:0000041.control_mean
        0.330842 From_analysis: RNASeq.japonica.WBls:0000041.control_median
        0.350653 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        0.354322 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        0.481807 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
        0.586269 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
      WBls:0000101 0.354322 From_analysis: RNASeq.japonica.total_over_all_stages.control_median
        0.844054 From_analysis: RNASeq.japonica.total_over_all_stages.control_mean
    GO_annotation: 00236668
      00236669
      00236670
      00236671
      00236672
    Ortholog (14)
    Paralog (11)
    Structured_description: Automated_description: Predicted to enable monoatomic cation channel activity. Predicted to be involved in monoatomic ion transport and transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans nca-2. In C. elegans, nca-2 is involved in positive regulation of GABAergic synaptic transmission; positive regulation of cholinergic synaptic transmission; and positive regulation of locomotion. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CJA40982a
      CJA40982b
      CJA40982c
    Corresponding_transcript: CJA40982a.1
      CJA40982b.1
      CJA40982c.1
    Other_sequence: JO468006.1
      ASC08878_1
      ASC28692_1
      AS06149
      MCC04834_1
      FE913820.1
      JI213961.1
      JI172681.1
      MC04588
      JI172151.1
  Experimental_info: Expr_pattern: Expr1085779
    Microarray_results: GPL14145_CJA28531_1701-1760_0.959_3_C
      GPL14145_CJA28531_1883-1942_0.962_2_B
      GPL14145_CJA28531_1890-1949_0.962_1_A
  Method: Gene