WormBase Tree Display for Gene: WBGene00236977

WBGene00236977 SMap: S_parent: Sequence: OVOC_OM1b_5
  Identity: Version: 2
    Name: CGC_name: Ovo-brf-1 From_analysis: Inferred_from_orthology
      Sequence_name: OVOC168
      Molecular_name: OVOC168
        OVOC168.1
        OVP04097
        OVOC168.2
      Public_name: Ovo-brf-1
    Species: Onchocerca volvulus
    History: Version_change: 1 29 Nov 2013 15:05:32 WBPerson3111 Event: Imported: MAKER import
        2 24 Jan 2014 16:01:33 WBPerson4055 Name_change: CGC_name: Ovo-brf-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: brf
    RNASeq_FPKM: WBls:0000101 3.47424 From_analysis: RNASeq.ovolvulus.total_over_all_stages.control_median
        5.7427 From_analysis: RNASeq.ovolvulus.total_over_all_stages.control_mean
      WBls:0000104 0.875356 From_analysis: RNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.ERP001350.ERX529045
        1.02066 From_analysis: RNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.ERP001350.ERX450842
        13.0812 From_analysis: RNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Male.WBbt:0007833.ERP001350.ERX200394
        1.48477 From_analysis: RNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Male.WBbt:0007833.SRP056861.SRX978162
        1.90355 From_analysis: RNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.ERP001350.ERX450840
        1.98525 From_analysis: RNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978159
        2.43143 From_analysis: RNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978157
        3.20929 From_analysis: RNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.ERP001350.ERX529044
        3.37007 From_analysis: RNASeq.ovolvulus.WBls:0000104.control_median
            RNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978156
        3.57841 From_analysis: RNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978158
        3.86855 From_analysis: RNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978160
        4.51974 From_analysis: RNASeq.ovolvulus.WBls:0000104.control_mean
        6.84131 From_analysis: RNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978163
        7.61786 From_analysis: RNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978164
        8.037 From_analysis: RNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.ERP001350.ERX450841
        8.49146 From_analysis: RNASeq.ovolvulus.WBStrain00041977.WBls:0000104.Female.WBbt:0007833.SRP056861.SRX978161
      WBls:0000107 3.19189 From_analysis: RNASeq.ovolvulus.WBls:0000107.control_mean
            RNASeq.ovolvulus.WBls:0000107.control_median
            RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395
      WBls:0000108 11.5664 From_analysis: RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393
        1.6022 From_analysis: RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391
        7.54421 From_analysis: RNASeq.ovolvulus.WBls:0000108.control_mean
        9.46402 From_analysis: RNASeq.ovolvulus.WBls:0000108.control_median
            RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392
      WBls:0000664 16.1713 From_analysis: RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396
        16.3594 From_analysis: RNASeq.ovolvulus.WBls:0000664.control_mean
            RNASeq.ovolvulus.WBls:0000664.control_median
        16.5474 From_analysis: RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397
    GO_annotation: 00250754
      00250755
      00250756
    Ortholog: WBGene00143129 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00033945 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00224370 Brugia malayi From_analysis: WormBase-Compara
      WBGene00000271 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00131755 Caenorhabditis japonica From_analysis: WormBase-Compara
      CSP21.g7020 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g6955 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g12188 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g9271 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g14681 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g6995 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g19494 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g1430 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g8347 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00367.g9847 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-brf-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold526.g3070 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00152.g5759 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_09465 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_006472 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g12553 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g15303 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20258000 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00054314 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00112176 Pristionchus pacificus From_analysis: WormBase-Compara
      chrII_pilon.g4989 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00257726 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00289395 Trichuris muris From_analysis: WormBase-Compara
    Paralog: WBGene00243613 Onchocerca volvulus From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable TBP-class protein binding activity. Predicted to be involved in transcription preinitiation complex assembly. Is an ortholog of C. elegans brf-1. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: OVOC168
    Corresponding_transcript: OVOC168.1
      OVOC168.2
    Other_sequence: ACC04820_1
      HCC02970_1
      GP03167
      GPC02432_1
      MH10232
      EY462694.1
      EY472445.1
      Dviv_isotig30173
      MI06907
      FE908944.1
      TCC02505_1
      Dviv_isotig26767
      Oden_isotig23611
      ACC16218_1
      JI468491.1
      FE907344.1
      FE906591.1
      GO240718.1
      Dviv_isotig26305
      GE626120.1
      TX00564
      EX554429.1
      JI174249.1
      GO250921.1
      JI471214.1
      MIC03789_1
      JI165406.1
  Method: Gene