WormBase Tree Display for Gene: WBGene00272468
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| WBGene00272468 | SMap | S_parent | Sequence | PPA_ChrII | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 6 | |||||||
| Name | CGC_name | Ppa-hmg-1.1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA34099 | ||||||||
| Molecular_name | PPA34099 | ||||||||
| PPA34099.1 | |||||||||
| PP06140 | |||||||||
| Public_name | Ppa-hmg-1.1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 24 Nov 2017 16:14:21 | WBPerson4055 | Event | Created | |||
| 2 | 20 Mar 2018 10:26:11 | WBPerson4025 | Name_change | CGC_name | Ppa-hmg-1.1 | ||||
| 3 | 08 Feb 2019 15:42:30 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 08 May 2019 10:09:25 | WBPerson1983 | Name_change | CGC_name | Ppa-hmg-1.1 | ||||
| 5 | 28 May 2021 19:05:21 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 28 Jul 2021 11:12:28 | WBPerson1983 | Name_change | CGC_name | Ppa-hmg-1.1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hmg | ||||||||
| RNASeq_FPKM | WBls:0000032 | 189.65 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 48.032 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 79.2273 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| Ortholog (28) | |||||||||
| Paralog | WBGene00096067 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| WBGene00101801 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Is predicted to encode a protein with the following domains: HMG (high mobility group) box; High mobility group box domain superfamily; and High mobility group box domain. Is an ortholog of C. elegans hmg-1.1. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA34099 | |||||||
| Corresponding_transcript | PPA34099.1 | ||||||||
| Other_sequence (169) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_64437 | |||||||
| GPL14372_Probes_64438 | |||||||||
| GPL14372_Probes_64439 | |||||||||
| Expression_cluster | WBPaper00064862:Ppa-sul-2(tu1069)_J4.12_Up | ||||||||
| WBPaper00041207:PP_dauer_up | |||||||||
| Remark | [190208 pad] The CGC name Ppa-hmg-1.1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-hmg-1.1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
