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WormBase Tree Display for Gene: WBGene00272967

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Name Class

WBGene00272967SMapS_parentSequencePPA_ChrI
IdentityVersion1
NameSequence_namePPA34598
Molecular_namePPA34598
PPA34598.1
PP66252
Public_namePPA34598
SpeciesPristionchus pacificus
HistoryVersion_change124 Nov 2017 16:14:21WBPerson4055EventCreated
StatusLive
Gene_infoBiotypeSO:0001217
RNASeq_FPKMWBls:00000323.39108From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001013.39108From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
3.80054From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
8.01055From_analysisRNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
GO_annotation00280923
Ortholog (44)
Paralog (148)
Structured_descriptionAutomated_descriptionPredicted to be a structural constituent of cuticle. Is an ortholog of C. elegans col-107; col-65; and col-54. In C. elegans, col-54 is involved in defense response to Gram-negative bacterium.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA34598
Corresponding_transcriptPPA34598.1
Other_sequenceCR09123
CRC09269_1
Experimental_infoMicroarray_resultsGPL14372_Probes_35743
Expression_clusterWBPaper00061743:ppa-eud-1(tu1069)_regulated
WBPaper00064862:Ppa-sul-2(tu1069)_4M3_Up
WBPaper00064862:Ppa-sul-2(tu1069)_J4.12_Up
MethodGene