WormBase Tree Display for Gene: WBGene00273905
expand all nodes | collapse all nodes | view schema
WBGene00273905 | SMap | S_parent | Sequence | PPA_ChrII | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 6 | |||||||
Name | CGC_name | Ppa-ire-1.1 | From_analysis | Inferred_from_orthology | |||||
Sequence_name | PPA35536 | ||||||||
Molecular_name | PPA35536 | ||||||||
PPA35536.1 | |||||||||
PP60641 | |||||||||
Public_name | Ppa-ire-1.1 | ||||||||
Species | Pristionchus pacificus | ||||||||
History | Version_change | 1 | 24 Nov 2017 16:14:21 | WBPerson4055 | Event | Created | |||
2 | 20 Mar 2018 10:26:12 | WBPerson4025 | Name_change | CGC_name | Ppa-ire-1.1 | ||||
3 | 08 Feb 2019 15:42:28 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
4 | 04 Feb 2020 15:43:57 | WBPerson1983 | Name_change | CGC_name | Ppa-ire-1.3 | ||||
5 | 28 May 2021 19:05:20 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
6 | 28 Jul 2021 11:12:29 | WBPerson1983 | Name_change | CGC_name | Ppa-ire-1.1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | ire | ||||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
WBls:0000101 | 1.89856 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
5.69569 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
GO_annotation | 00281444 | ||||||||
00281445 | |||||||||
00281446 | |||||||||
00281447 | |||||||||
00281448 | |||||||||
Ortholog (51) | |||||||||
Paralog | WBGene00091492 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
WBGene00117190 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
WBGene00274756 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
WBGene00274758 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
Structured_description | Automated_description | Predicted to enable ATP binding activity; RNA nuclease activity; and protein kinase activity. Predicted to be involved in mRNA processing. Is an ortholog of C. elegans ire-1. In C. elegans, ire-1 is involved in nematode larval development; response to endoplasmic reticulum stress; and response to hypoxia. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | PPA35536 | |||||||
Corresponding_transcript | PPA35536.1 | ||||||||
Other_sequence | PPC14362_1 | ||||||||
Experimental_info | Microarray_results | GPL14372_Probes_12596 | |||||||
GPL14372_Probes_12597 | |||||||||
GPL14372_Probes_59134 | |||||||||
Remark | [190208 pad] The CGC name Ppa-ire-1.1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
[210528 pad] The CGC name Ppa-ire-1.3 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
Method | Gene |