WormBase Tree Display for Gene: WBGene00274004
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| WBGene00274004 | SMap | S_parent | Sequence | PPA_ChrV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 6 | |||||||
| Name | CGC_name | Ppa-tub-2 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA35635 | ||||||||
| Molecular_name | PPA35635 | ||||||||
| PPA35635.1 | |||||||||
| PP75874 | |||||||||
| Public_name | Ppa-tub-2 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 24 Nov 2017 16:14:21 | WBPerson4055 | Event | Created | |||
| 2 | 20 Mar 2018 10:26:11 | WBPerson4025 | Name_change | CGC_name | Ppa-tub-2 | ||||
| 3 | 08 Feb 2019 15:42:29 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 08 May 2019 10:09:25 | WBPerson1983 | Name_change | CGC_name | Ppa-tub-2 | ||||
| 5 | 28 May 2021 19:05:21 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 28 Jul 2021 11:12:29 | WBPerson1983 | Name_change | CGC_name | Ppa-tub-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tub | ||||||||
| RNASeq_FPKM | WBls:0000032 | 19.5611 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 15.4055 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 19.5611 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| 26.6553 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| Ortholog (32) | |||||||||
| Paralog | WBGene00102358 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| WBGene00112892 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Is predicted to encode a protein with the following domains: Tub family; Tubby, C-terminal; Tubby-like, C-terminal; WD40-repeat-containing domain superfamily; WD40/YVTN repeat-like-containing domain superfamily; and WD40 repeat. Is an ortholog of C. elegans tub-2. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA35635 | |||||||
| Corresponding_CDS_history | PPA35635:pp275 | ||||||||
| Corresponding_transcript | PPA35635.1 | ||||||||
| Other_sequence (33) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_43331 | |||||||
| GPL14372_Probes_43332 | |||||||||
| GPL14372_Probes_43333 | |||||||||
| GPL14372_Probes_43334 | |||||||||
| GPL14372_Probes_43335 | |||||||||
| GPL14372_Probes_43336 | |||||||||
| GPL14372_Probes_43337 | |||||||||
| GPL14372_Probes_43338 | |||||||||
| GPL14372_Probes_43339 | |||||||||
| GPL14372_Probes_43340 | |||||||||
| Expression_cluster | WBPaper00041207:PP_dauer_up | ||||||||
| Remark | [190208 pad] The CGC name Ppa-tub-2 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-tub-2 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
