WormBase Tree Display for Gene: WBGene00275943
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| WBGene00275943 | SMap | S_parent | Sequence | PPA_ChrIII | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 6 | |||||||
| Name | CGC_name | Ppa-sca-1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA37574 | ||||||||
| Molecular_name | PPA37574 | ||||||||
| PPA37574.1 | |||||||||
| PP58905 | |||||||||
| Public_name | Ppa-sca-1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 24 Nov 2017 16:14:21 | WBPerson4055 | Event | Created | |||
| 2 | 20 Mar 2018 10:26:11 | WBPerson4025 | Name_change | CGC_name | Ppa-sca-1 | ||||
| 3 | 08 Feb 2019 15:42:28 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 08 May 2019 10:09:23 | WBPerson1983 | Name_change | CGC_name | Ppa-sca-1 | ||||
| 5 | 28 May 2021 19:05:20 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 28 Jul 2021 11:12:28 | WBPerson1983 | Name_change | CGC_name | Ppa-sca-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sca | ||||||||
| RNASeq_FPKM | WBls:0000032 | 4.31721 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 1.43907 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00282631 | ||||||||
| 00282632 | |||||||||
| 00282633 | |||||||||
| 00282634 | |||||||||
| 00282635 | |||||||||
| 00282636 | |||||||||
| 00282637 | |||||||||
| Ortholog (31) | |||||||||
| Paralog (18) | |||||||||
| Structured_description | Automated_description | Predicted to enable ATP binding activity; ATP hydrolysis activity; and P-type calcium transporter activity. Predicted to be involved in calcium ion transport. Predicted to be located in membrane. Is an ortholog of C. elegans sca-1. In C. elegans, sca-1 is involved in several processes, including IRE1-mediated unfolded protein response; calcium ion import; and chemical homeostasis. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA37574 | |||||||
| Corresponding_transcript | PPA37574.1 | ||||||||
| Other_sequence (152) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_5881 | |||||||
| GPL14372_Probes_5882 | |||||||||
| GPL14372_Probes_5883 | |||||||||
| GPL14372_Probes_5884 | |||||||||
| GPL14372_Probes_5885 | |||||||||
| GPL14372_Probes_47064 | |||||||||
| Expression_cluster | WBPaper00041207:PP_dauer_down | ||||||||
| Remark | [190208 pad] The CGC name Ppa-sca-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-sca-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
