WormBase Tree Display for Gene: WBGene00275957
expand all nodes | collapse all nodes | view schema
| WBGene00275957 | SMap | S_parent | Sequence | PPA_ChrIII | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 6 | |||||||
| Name | CGC_name | Ppa-tat-2 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA37588 | ||||||||
| Molecular_name | PPA37588 | ||||||||
| PPA37588.1 | |||||||||
| PP63207 | |||||||||
| Public_name | Ppa-tat-2 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 24 Nov 2017 16:14:21 | WBPerson4055 | Event | Created | |||
| 2 | 20 Mar 2018 10:26:12 | WBPerson4025 | Name_change | CGC_name | Ppa-tat-2 | ||||
| 3 | 08 Feb 2019 15:42:28 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 08 May 2019 10:09:26 | WBPerson1983 | Name_change | CGC_name | Ppa-tat-2 | ||||
| 5 | 28 May 2021 19:05:20 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 28 Jul 2021 11:12:29 | WBPerson1983 | Name_change | CGC_name | Ppa-tat-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tat | ||||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 0.34638 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 1.03914 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| GO_annotation | 00282654 | ||||||||
| 00282655 | |||||||||
| 00282656 | |||||||||
| 00282657 | |||||||||
| 00282658 | |||||||||
| 00282659 | |||||||||
| 00282660 | |||||||||
| 00282661 | |||||||||
| Ortholog (50) | |||||||||
| Paralog | WBGene00094937 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| WBGene00117010 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00274091 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00274135 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00278406 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable ATP hydrolysis activity; ATPase-coupled intramembrane lipid transporter activity; and ion binding activity. Predicted to be involved in phospholipid transport. Predicted to be located in membrane. Is an ortholog of C. elegans tat-2. In C. elegans, tat-2 is involved in sterol metabolic process. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA37588 | |||||||
| Corresponding_transcript | PPA37588.1 | ||||||||
| Other_sequence (19) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_46964 | |||||||
| GPL14372_Probes_46965 | |||||||||
| Expression_cluster | WBPaper00041606:PP_X.nematophila_regulated | ||||||||
| Remark | [190208 pad] The CGC name Ppa-tat-2 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-tat-2 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
