WormBase Tree Display for Gene: WBGene00277454
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| WBGene00277454 | SMap | S_parent | Sequence | PPA_ChrII | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 6 | |||||||
| Name | Sequence_name | PPA39085 | |||||||
| Molecular_name | PPA39085 | ||||||||
| PPA39085.1 | |||||||||
| PP73620 | |||||||||
| Public_name | PPA39085 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 24 Nov 2017 16:14:21 | WBPerson4055 | Event | Created | |||
| 2 | 08 May 2019 10:09:25 | WBPerson1983 | Name_change | CGC_name | Ppa-col-153 | ||||
| 3 | 01 Oct 2019 10:47:49 | WBPerson1983 | Name_change | CGC_name | Ppa-col-111.3 | ||||
| Other_name | Ppa-col-153 | ||||||||
| 4 | 27 Nov 2019 12:48:15 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 5 | 04 Feb 2020 15:43:56 | WBPerson1983 | Name_change | CGC_name | Ppa-col-153 | ||||
| 6 | 04 Jun 2020 14:38:22 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 1.17907 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| 3.53722 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00283714 | ||||||||
| Ortholog | CSP21.g9685 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | |||||
| CSP31.g11310 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
| CSP38.g10978 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
| CSP38.g18755 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
| Cang_2012_03_13_00002.g218 | Caenorhabditis angaria | From_analysis | WormBase-Compara | ||||||
| Paralog (148) | |||||||||
| Structured_description | Automated_description | Predicted to be a structural constituent of cuticle. Is an ortholog of C. elegans col-56. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA39085 | |||||||
| Corresponding_transcript | PPA39085.1 | ||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_79213 | |||||||
| GPL14372_Probes_79215 | |||||||||
| GPL14372_Probes_79216 | |||||||||
| Remark | [191127 pad] The CGC name Ppa-col-111.3 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| Removing identical Other_name Ppa-col-153 | |||||||||
| [200603 pad] The CGC name Ppa-col-153 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
