WormBase Tree Display for Gene: WBGene00277970

WBGene00277970 SMap: S_parent: Sequence: PPA_ChrV
  Identity: Version: 6
    Name: CGC_name: Ppa-herc-1 From_analysis: Inferred_from_orthology
      Sequence_name: PPA39601
      Molecular_name: PPA39601
        PPA39601.1
        PP61377
      Other_name: Ppa-nsun-2.4 From_analysis: Inferred_from_orthology
      Public_name: Ppa-herc-1
    Species: Pristionchus pacificus
    History: Version_change: 1 24 Nov 2017 16:14:22 WBPerson4055 Event: Created
        2 08 May 2019 10:09:26 WBPerson1983 Name_change: CGC_name: Ppa-herc-1
        3 04 Feb 2020 15:43:57 WBPerson1983 Name_change: CGC_name: Ppa-nsun-2.4
                Other_name: Ppa-herc-1
        4 04 Jun 2020 14:38:21 WBPerson1983 Name_change: CGC_name: Ppa-herc-1
                Other_name: Ppa-nsun-2.4
        5 28 May 2021 19:05:20 WBPerson1983 Name_change: CGC_name: Removed
        6 28 Jul 2021 11:12:29 WBPerson1983 Name_change: CGC_name: Ppa-herc-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: herc
    RNASeq_FPKM: WBls:0000032 1.93497 From_analysis: RNASeq.pristionchus.WBls:0000032.control_mean
            RNASeq.pristionchus.WBls:0000032.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 0.64499 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_mean
        0 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_median
            RNASeq.pristionchus.WBls:0000101.control_mean
            RNASeq.pristionchus.WBls:0000101.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
    GO_annotation: 00284069
      00284070
      00284071
      00284072
      00284073
    Ortholog (27)
    Paralog: WBGene00091716 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00093680 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00099275 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00112263 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00116898 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00204228 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00279783 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00304671 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00306023 Pristionchus pacificus From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable tRNA (cytosine-5-)-methyltransferase activity and ubiquitin-protein transferase activity. Predicted to be involved in RNA methylation. Is an ortholog of C. elegans herc-1. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: PPA39601
    Corresponding_transcript: PPA39601.1
    Other_sequence (28)
  Experimental_info: Microarray_results: GPL14372_Probes_79767
      GPL14372_Probes_79769
      GPL14372_Probes_79770
      GPL14372_Probes_79771
      GPL14372_Probes_79773
    Expression_cluster: WBPaper00041207:PP_dauer_down
  Remark: [210528 pad] The CGC name Ppa-herc-1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene