WormBase Schema for Model: Interaction
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?Interaction | Interaction_type | Physical | UNIQUE | ProteinProtein | ||
---|---|---|---|---|---|---|
ProteinDNA | ||||||
ProteinRNA | ||||||
Predicted | ||||||
Regulatory | Change_of_localization | |||||
Change_of_expression_level | ||||||
Genetic (33) | ||||||
GI_module_one | A_phenotypic | |||||
Mono_phenotypic | ||||||
Cis_phenotypic | ||||||
Iso_phenotypic | ||||||
Trans_phenotypic | ||||||
GI_module_two (9) | ||||||
GI_module_three (6) | ||||||
Interactor | PCR_interactor | ?PCR_product | XREF | Interaction | #Interactor_info | |
Sequence_interactor | ?Sequence | XREF | Interaction | #Interactor_info | ||
Interactor_overlapping_CDS | ?CDS | XREF | Interaction | #Interactor_info | ||
Interactor_overlapping_gene | ?Gene | XREF | Interaction | #Interactor_info | ||
Interactor_overlapping_protein | ?Protein | XREF | Interaction | #Interactor_info | ||
Molecule_interactor | ?Molecule | XREF | Interaction | #Interactor_info | ||
Other_interactor | ?Text | #Interactor_info | ||||
Rearrangement | ?Rearrangement | XREF | Interactor | #Interactor_info | ||
Feature_interactor | ?Feature | XREF | Associated_with_Interaction | #Interactor_info | ||
Variation_interactor | ?Variation | XREF | Interactor | #Interactor_info | ||
Interaction_summary | ?Text | #Evidence | ||||
Detection_method | Affinity_capture_luminescence | |||||
Affinity_capture_MS | ||||||
Affinity_capture_RNA | ||||||
Affinity_capture_Western | ||||||
Chromatin_immunoprecipitation | ||||||
Cofractionation | ||||||
Colocalization | ||||||
Construct | ||||||
Copurification | ||||||
DNase_I_footprinting | ||||||
Fluorescence_resonance_energy_transfer | ||||||
Protein_fragment_complementation_assay | ||||||
Yeast_two_hybrid | ||||||
Biochemical_activity | ||||||
Cocrystal_structure | ||||||
Far_western | ||||||
Protein_peptide | ||||||
Protein_RNA | ||||||
Reconstituted_complex | ||||||
Electrophoretic_mobility_shift_assay | ||||||
Yeast_one_hybrid | ||||||
Directed_yeast_one_hybrid | ||||||
Antibody | ||||||
Reporter_gene | ?Text | |||||
Transgene | ||||||
In_situ | Text | |||||
Northern | Text | |||||
Western | Text | |||||
RT_PCR | Text | |||||
Other_method | ?Text | |||||
Library_info | Library_screened | Text | Int | |||
Origin (2) | ||||||
Regulation_level | Transcriptional | |||||
Post_transcriptional | ||||||
Post_translational | ||||||
Regulation_result | Positive_regulate | #GR_condition | ||||
Negative_regulate | #GR_condition | |||||
Does_not_regulate | #GR_condition | |||||
Confidence | Description | Text | ||||
P_value | UNIQUE | Float | ||||
Log_likelihood_score | UNIQUE | Float | ||||
Throughput | UNIQUE | High_throughput | ||||
Low_throughput | ||||||
Interaction_RNAi | ?RNAi | XREF | Interaction | |||
Interaction_phenotype | ?Phenotype | XREF | Interaction | |||
Unaffiliated_variation | ?Variation | |||||
Unaffiliated_transgene | ?Transgene | |||||
Unaffiliated_antibody | ?Antibody | |||||
Unaffiliated_expr_pattern | ?Expr_pattern | |||||
Unaffiliated_construct | ?Construct | |||||
WBProcess | ?WBProcess | XREF | Interaction | |||
DB_info | Database | ?Database | ?Database_field | ?Text | ||
Paper | ?Paper | XREF | Interaction | |||
Antibody_remark | ?Text | |||||
Historical_gene | ?Gene | Text | ||||
Remark | ?Text | #Evidence |