WormBase Tree Display for Pseudogene: F25C8.1
expand all nodes | collapse all nodes | view schema
| F25C8.1 | Evidence | Inferred_automatically | make_isoforms.pl | ||
|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F25C8 | ||
| Structure | Source_exons | 1 | 117 | ||
| 162 | 340 | ||||
| 388 | 892 | ||||
| 939 | 1462 | ||||
| 1512 | 1764 | ||||
| 1810 | 2003 | ||||
| 2061 | 2277 | ||||
| DB_info | DB_remark | coding pseudogene | |||
| Origin | From_laboratory | HX | |||
| Species | Caenorhabditis elegans | ||||
| Type | Coding_pseudogene | ||||
| Attributes | SubType | unprocessed_pseudogene | |||
| Visible | Gene | WBGene00009104 | |||
| Brief_identification | Curated Pseudogene | ||||
| Corresponding_PCR_product | cenix:21-a5 | ||||
| mv_F25C8.1 | |||||
| sjj_F25C8.1 | |||||
| Corresponding_oligo_set (16) | |||||
| Variation (54) | |||||
| Microarray_results (17) | |||||
| RNASeq_FPKM (74) | |||||
| Last_reviewed | 12 Jul 2010 00:00:00 | WBPerson4025 | |||
| Remark | [980528:jd] stop at base 31075 prevents use of full homology to F59F4.1 in gene | ||||
| Annotation based on homology to SwissProt P07872 (BLASTP score 969) | |||||
| [080222 gw3] Took a look at this. It is unclear how to improve this gene structure. It is possible that this is a pseudogene of F59F4.1. There is no mass-spec or phenotypic evidence that it is not a pseudogene. | Curator_confirmed | WBPerson4025 | |||
| [100712 gw3] Converted this from a CDS to a Pseudogene because the most reasonable and likely model introduces a stop in exon 5. | |||||
| Method | Pseudogene |
