WormBase Tree Display for Sequence: Cbre_Contig136
expand all nodes | collapse all nodes | view schema
Cbre_Contig136 | DNA | Cbre_Contig136 | 542523 | |||
---|---|---|---|---|---|---|
SMap | S_child | Gene_child (107) | ||||
CDS_child | CBN00618 | 81882 | 82181 | |||
CBN00672 | 290946 | 289726 | ||||
CBN01200 | 366335 | 368918 | ||||
CBN01254 | 137919 | 139225 | ||||
CBN01366 | 72041 | 70453 | ||||
CBN01366:np197 | 70452 | 72040 | ||||
CBN01969 | 35254 | 38364 | ||||
CBN02342 | 142264 | 143430 | ||||
CBN02506 | 15335 | 17161 | ||||
CBN02938 | 156505 | 155183 | ||||
CBN02963 | 377457 | 376070 | ||||
CBN02963:np200 | 377390 | 377071 | ||||
CBN03380 | 533587 | 530881 | ||||
CBN03442 | 352876 | 354782 | ||||
CBN03499 | 486758 | 488063 | ||||
CBN04121 | 39150 | 44394 | ||||
CBN04220 | 317161 | 318851 | ||||
CBN05101 | 244445 | 244156 | ||||
CBN05157 | 316698 | 314493 | ||||
CBN05157:np198 | 314492 | 316697 | ||||
CBN05427 | 291484 | 294594 | ||||
CBN06557 | 145853 | 145254 | ||||
CBN06583 | 85979 | 84708 | ||||
CBN06744 | 143859 | 145041 | ||||
CBN07526 | 509261 | 493432 | ||||
CBN07907 | 322122 | 324279 | ||||
CBN07907:np198 | 324278 | 322121 | ||||
CBN09498 | 442831 | 440655 | ||||
CBN09595 | 438721 | 438292 | ||||
CBN09764 | 451460 | 455557 | ||||
CBN09816 | 25570 | 29313 | ||||
CBN09844 | 47999 | 47689 | ||||
CBN09844:np197 | 47688 | 47998 | ||||
CBN10106 | 411417 | 408152 | ||||
CBN10834 | 197944 | 191548 | ||||
CBN11040 | 165955 | 162162 | ||||
CBN11447 | 48706 | 48228 | ||||
CBN11447:np197 | 48227 | 48705 | ||||
CBN11946 | 22568 | 20851 | ||||
CBN11946:np197 | 20850 | 22567 | ||||
CBN12053 | 361618 | 363349 | ||||
CBN12286 | 94774 | 95395 | ||||
CBN13384 | 286700 | 284743 | ||||
CBN13384:np198 | 286314 | 284743 | ||||
CBN13384:np204 | 286315 | 284744 | ||||
CBN13926 | 50312 | 48948 | ||||
CBN13926:np197 | 48947 | 50311 | ||||
CBN13978 | 51375 | 53212 | ||||
CBN14099 | 462204 | 463997 | ||||
CBN14099:np198 | 462280 | 463432 | ||||
CBN14099:np204 | 462282 | 463434 | ||||
CBN14405 | 153534 | 152441 | ||||
CBN14483 | 439100 | 439734 | ||||
CBN15408 | 31486 | 29593 | ||||
CBN15408:np199 | 29592 | 31485 | ||||
CBN15567 | 443398 | 446071 | ||||
CBN15959 | 157982 | 157092 | ||||
CBN17903 | 32341 | 31850 | ||||
CBN17903:np197 | 31849 | 32340 | ||||
CBN18658 | 488433 | 490543 | ||||
CBN19891 | 200905 | 202431 | ||||
CBN20479:np197 | 419281 | 419274 | ||||
CBN20503 | 319623 | 321548 | ||||
CBN20653 | 372009 | 373995 | ||||
CBN20952 | 45071 | 47215 | ||||
CBN21480:np207 | 275634 | 275578 | ||||
CBN22765 | 339701 | 340285 | ||||
CBN22765:np207 | 339789 | 340285 | ||||
CBN22900 | 375382 | 374261 | ||||
CBN23447 | 397059 | 395767 | ||||
CBN23616:np200 | 376536 | 376070 | ||||
CBN24286 | 240179 | 241548 | ||||
CBN24765 | 479978 | 481670 | ||||
CBN24765:np208 | 480605 | 481491 | ||||
CBN25861 | 412340 | 414809 | ||||
CBN28110 | 126997 | 120695 | ||||
CBN28338 | 469395 | 471244 | ||||
CBN28648 | 32644 | 33716 | ||||
CBN28747 | 370521 | 369179 | ||||
CBN29063 | 141016 | 141789 | ||||
CBN29204 | 477819 | 478800 | ||||
CBN29353 | 242949 | 241835 | ||||
CBN29360 | 239855 | 237996 | ||||
CBN29379 | 128681 | 130042 | ||||
CBN29435 | 289255 | 286897 | ||||
CBN29496 | 3646 | 4869 | ||||
CBN29639 | 235509 | 233552 | ||||
CBN29674 | 355465 | 359146 | ||||
CBN29816 | 220418 | 221685 | ||||
CBN29934 | 136773 | 134045 | ||||
CBN30031 | 458110 | 455983 | ||||
CBN30352 | 382289 | 381776 | ||||
CBN30365 | 2945 | 4 | ||||
CBN30608 | 359430 | 361110 | ||||
CBN30660 | 364304 | 366146 | ||||
CBN30685 | 204857 | 204139 | ||||
CBN30725 | 151807 | 149569 | ||||
CBN30832 | 173998 | 182369 | ||||
CBN30880 | 381609 | 378084 | ||||
CBN30970 | 232326 | 225317 | ||||
CBN31168 | 270330 | 268751 | ||||
CBN31501 | 149190 | 148813 | ||||
CBN31700 | 388646 | 391580 | ||||
CBN31821 | 119880 | 111776 | ||||
CBN32104 | 83654 | 82333 | ||||
CBN32175 | 295026 | 295590 | ||||
CBN32308 | 350267 | 351862 | ||||
CBN32357 | 265412 | 266938 | ||||
CBN32502 | 66192 | 69814 | ||||
CBN32710 | 341007 | 343738 | ||||
GBG_brenneri_F54D7.2 | 469395 | 471244 | ||||
GBG_brenneri_M04F3.5b | 397059 | 394858 | ||||
GBG_brenneri_B0207.5b | 119880 | 111635 | ||||
GBG_brenneri_C04F1.3 | 211185 | 204139 | ||||
GBG_brenneri_C10H11.8b | 377457 | 376070 | ||||
GBG_brenneri_M04F3.4b | 394299 | 393473 | ||||
GBG_brenneri_F08H9.1 | 443596 | 446406 | ||||
GBG_brenneri_F36H12.9 | 220421 | 221685 | ||||
GBG_brenneri_C34G6.5 | 159794 | 161561 | ||||
GBG_brenneri_F57C9.4c | 479978 | 481670 | ||||
GBG_brenneri_C34G6.2 | 136773 | 134045 | ||||
GBG_brenneri_W02D3.11b | 35254 | 36833 | ||||
GBG_brenneri_Y39G10AR.18c | 320428 | 321548 | ||||
GBG_brenneri_F16D3.6 | 72041 | 70453 | ||||
GBG_brenneri_Y39G10AR.18a | 316865 | 321548 | ||||
GBG_brenneri_W02D3.10 | 38626 | 44394 | ||||
GBG_brenneri_F57C9.1b | 486613 | 488063 | ||||
GBG_brenneri_F33D11.5 | 31486 | 29593 | ||||
GBG_brenneri_F57C9.3b | 482034 | 483809 | ||||
GBG_brenneri_C38D9.8 | 491119 | 492190 | ||||
GBG_brenneri_W02D3.1 | 48706 | 48228 | ||||
GBG_brenneri_F20B6.1 | 465852 | 464572 | ||||
GBG_brenneri_W09C3.7 | 339774 | 340285 | ||||
GBG_brenneri_C41D11.5 | 245224 | 244156 | ||||
GBG_brenneri_Y39G10AR.2b | 316698 | 314493 | ||||
GBG_brenneri_Y39G10AR.2d | 316078 | 314493 | ||||
GBG_brenneri_F23B12.8b | 411844 | 408152 | ||||
GBG_brenneri_Y39G10AR.17 | 321680 | 324279 | ||||
GBG_brenneri_W02D3.9 | 45071 | 47444 | ||||
GBG_brenneri_F47B3.2 | 138203 | 139525 | ||||
GBG_brenneri_C34G6.4b | 173998 | 182369 | ||||
GBG_brenneri_F33D11.9g | 150797 | 148813 | ||||
GBG_brenneri_F54D7.3a | 451460 | 455793 | ||||
GBG_brenneri_W02D3.12 | 47999 | 47689 | ||||
GBG_brenneri_C34G6.4d | 177386 | 182369 | ||||
GBG_brenneri_C32F10.2 | 3129 | 1 | ||||
GBG_brenneri_Y106G6D.4 | 350267 | 351862 | ||||
GBG_brenneri_M04F3.4a | 394299 | 393473 | ||||
GBG_brenneri_C10H11.8a | 377561 | 376070 | ||||
GBG_brenneri_C23G10.6 | 352876 | 354782 | ||||
GBG_brenneri_W02D3.8 | 51362 | 53212 | ||||
GBG_brenneri_Y39G10AR.2c | 316078 | 314493 | ||||
GBG_brenneri_Y45G5AM.8b | 444397 | 446071 | ||||
GBG_brenneri_C32F10.8a | 22568 | 20851 | ||||
GBG_brenneri_C10H11.3 | 372009 | 373995 | ||||
GBG_brenneri_Y45G5AM.8a | 443596 | 446071 | ||||
GBG_brenneri_F57C9.1a | 486758 | 488063 | ||||
GBG_brenneri_Y23H5B.4 | 272764 | 268751 | ||||
GBG_brenneri_Y71F9AL.4 | 457986 | 455426 | ||||
GBG_brenneri_F57C9.1c | 486758 | 488063 | ||||
GBG_brenneri_C30F12.6 | 533587 | 530881 | ||||
GBG_brenneri_F57C9.4b | 479978 | 481670 | ||||
GBG_brenneri_T01G5.2 | 361618 | 363580 | ||||
GBG_brenneri_C10H11.4 | 361618 | 363580 | ||||
GBG_brenneri_F54E12.2 | 355465 | 359146 | ||||
GBG_brenneri_C32F10.4 | 3195 | 4869 | ||||
GBG_brenneri_F54D7.6 | 403219 | 403356 | ||||
GBG_brenneri_B0207.9 | 84068 | 84598 | ||||
GBG_brenneri_C32F10.8b | 22568 | 19727 | ||||
GBG_brenneri_F42G2.5 | 157982 | 157010 | ||||
GBG_brenneri_F57C9.6 | 477807 | 479303 | ||||
GBG_brenneri_C34G6.4a | 173998 | 182369 | ||||
GBG_brenneri_F41H10.2 | 355470 | 358681 | ||||
GBG_brenneri_Y39G10AR.2a | 316698 | 314493 | ||||
GBG_brenneri_C10H11.1 | 388646 | 391580 | ||||
GBG_brenneri_W09C3.8 | 337055 | 337493 | ||||
GBG_brenneri_F54D7.3b | 451460 | 455728 | ||||
GBG_brenneri_C41D11.9 | 244614 | 243181 | ||||
GBG_brenneri_F23B12.8a | 411417 | 408152 | ||||
GBG_brenneri_F57C9.3a | 482034 | 483878 | ||||
GBG_brenneri_Y53G8B.1 | 467883 | 467005 | ||||
GBG_brenneri_Y45G5AM.8c | 444818 | 446071 | ||||
GBG_brenneri_B0207.2 | 85979 | 84708 | ||||
GBG_brenneri_C10H11.6b | 364304 | 366146 | ||||
GBG_brenneri_R13H9.1 | 141077 | 141789 | ||||
GBG_brenneri_F54D7.4 | 406543 | 405417 | ||||
GBG_brenneri_F31E9.4 | 491162 | 492190 | ||||
GBG_brenneri_W02D3.11a | 35254 | 38364 | ||||
GBG_brenneri_Y39G10AR.18b | 319524 | 321548 | ||||
GBG_brenneri_C34G6.4c | 177386 | 182369 | ||||
GBG_brenneri_F33D11.9h | 150797 | 148813 | ||||
GBG_brenneri_C10H11.9 | 382289 | 378084 | ||||
GBG_brenneri_M04F3.5a | 397131 | 394858 | ||||
GBG_brenneri_R13H9.6 | 220421 | 221685 | ||||
GBG_brenneri_B0207.5a | 119880 | 111635 | ||||
GBG_brenneri_F20B6.6 | 457701 | 456537 | ||||
GBG_brenneri_K02E11.1 | 264254 | 266938 | ||||
GBG_brenneri_Y71F9AL.5 | 467883 | 467005 | ||||
GBG_brenneri_Y47D9A.3 | 350098 | 349255 | ||||
GBG_brenneri_R11E3.1 | 488433 | 490449 | ||||
GBG_brenneri_F23C8.8 | 439839 | 440930 | ||||
GBG_brenneri_M04F3.1 | 392189 | 393180 | ||||
GBG_brenneri_C10H11.6a | 364304 | 366146 | ||||
GBG_brenneri_B0207.1 | 187220 | 189815 | ||||
GBG_brenneri_F54D7.7 | 405107 | 405245 | ||||
Transcript (107) | ||||||
Feature_object (151) | ||||||
Feature_data | Cbre_Contig136:Dust | 1 | 542523 | |||
Cbre_Contig136:RNASeq_polyA:1 | ||||||
Cbre_Contig136:RNASeq_polyA:2 | ||||||
Cbre_Contig136:RNASeq_SL1:1 | ||||||
Cbre_Contig136:RNASeq_SL1:2 | ||||||
Cbre_Contig136:RNASeq_SL2:1 | ||||||
Cbre_Contig136:RNASeq_SL2:2 | ||||||
Confirmed_intron_EST:Cbre_Contig136_4 | 450001 | 542523 | ||||
Confirmed_intron_EST:Cbre_Contig136_2 | 150001 | 300000 | ||||
Confirmed_intron_EST:Cbre_Contig136_1 | 1 | 150000 | ||||
Confirmed_intron_EST:Cbre_Contig136_3 | 300001 | 450000 | ||||
Cbre_Contig136:TRF | 1 | 542523 | ||||
Cbre_Contig136:inverted | 1 | 551566 | ||||
Cbre_Contig136:Confirmed_intron_RNASeq:1 | 1 | 300000 | ||||
Cbre_Contig136:Confirmed_intron_RNASeq:2 | 300001 | 542523 | ||||
Cbre_Contig136:RNASeq:1 | 1 | 300000 | ||||
Cbre_Contig136:RNASeq:2 | 300001 | 542523 | ||||
Cbre_Contig136:RNASeq_stranded_reads:1 | 1 | 300000 | ||||
Cbre_Contig136:RNASeq_stranded_reads:2 | 300001 | 542523 | ||||
Cbre_Contig136:RNASeq_forward_reads:1 | 1 | 300000 | ||||
Cbre_Contig136:RNASeq_forward_reads:2 | 300001 | 542523 | ||||
Cbre_Contig136:RNASeq_reverse_reads:1 | 1 | 300000 | ||||
Cbre_Contig136:RNASeq_reverse_reads:2 | 300001 | 542523 | ||||
Homol_data | Oligo_set:Cbre_Contig136:AGILENT | 1 | 542523 | |||
BLAT_mRNA:Cbre_Contig136_1 | 1 | 150000 | ||||
BLAT_mRNA:Cbre_Contig136_3 | 300001 | 450000 | ||||
BLAT_EST:Cbre_Contig136 | 1 | 542523 | ||||
BLAT_EST:Cbre_Contig136_1 | 1 | 150000 | ||||
BLAT_EST:Cbre_Contig136_2 | 150001 | 300000 | ||||
BLAT_EST:Cbre_Contig136_3 | 300001 | 450000 | ||||
BLAT_EST:Cbre_Contig136_4 | 450001 | 542523 | ||||
BLAT_Trinity:Cbre_Contig136 | 1 | 542523 | ||||
BLAT_Trinity:Cbre_Contig136_1 | 1 | 150000 | ||||
BLAT_Trinity:Cbre_Contig136_2 | 150001 | 300000 | ||||
BLAT_Trinity:Cbre_Contig136_3 | 300001 | 450000 | ||||
BLAT_Trinity:Cbre_Contig136_4 | 450001 | 542523 | ||||
BLAT_mRNA:Cbre_Contig136_2 | 150001 | 300000 | ||||
BLAT_mRNA:Cbre_Contig136_4 | 450001 | 542523 | ||||
BLAT_ncRNA:Cbre_Contig136_1 | 1 | 150000 | ||||
BLAT_ncRNA:Cbre_Contig136_2 | 150001 | 300000 | ||||
BLAT_OST:Cbre_Contig136 | 1 | 542523 | ||||
BLAT_OST:Cbre_Contig136_1 | 1 | 150000 | ||||
BLAT_OST:Cbre_Contig136_2 | 150001 | 300000 | ||||
BLAT_OST:Cbre_Contig136_3 | 300001 | 450000 | ||||
BLAT_OST:Cbre_Contig136_4 | 450001 | 542523 | ||||
BLAT_RST:Cbre_Contig136_1 | 1 | 150000 | ||||
BLAT_RST:Cbre_Contig136_2 | 150001 | 300000 | ||||
BLAT_RST:Cbre_Contig136_3 | 300001 | 450000 | ||||
BLAT_IsoSeq:Cbre_Contig136 | 1 | 542523 | ||||
BLAT_IsoSeq:Cbre_Contig136_1 | 1 | 150000 | ||||
BLAT_IsoSeq:Cbre_Contig136_2 | 150001 | 300000 | ||||
BLAT_IsoSeq:Cbre_Contig136_3 | 300001 | 450000 | ||||
BLAT_IsoSeq:Cbre_Contig136_4 | 450001 | 542523 | ||||
Cbre_Contig136:wublastx_brenneri | 1 | 542523 | ||||
Cbre_Contig136:wublastx_briggsae | 1 | 542523 | ||||
Cbre_Contig136:wublastx_brugia | 1 | 542523 | ||||
Cbre_Contig136:wublastx_fly | 1 | 542523 | ||||
Cbre_Contig136:wublastx_human | 1 | 542523 | ||||
Cbre_Contig136:wublastx_japonica | 1 | 542523 | ||||
Cbre_Contig136:wublastx_ovolvulus | 1 | 542523 | ||||
Cbre_Contig136:wublastx_pristionchus | 1 | 542523 | ||||
Cbre_Contig136:wublastx_remanei | 1 | 542523 | ||||
Cbre_Contig136:wublastx_slimSwissProt | 1 | 542523 | ||||
Cbre_Contig136:wublastx_sratti | 1 | 542523 | ||||
Cbre_Contig136:wublastx_tmuris | 1 | 542523 | ||||
Cbre_Contig136:wublastx_worm | 1 | 542523 | ||||
Cbre_Contig136:wublastx_yeast | 1 | 542523 | ||||
Cbre_Contig136:RepeatMasker | 1 | 542523 | ||||
DB_info | Database | GenBank | GL_ID | Scfld02_136 | ||
GL_AC | GL379922 | |||||
DB_remark | [100920] Sequence correction: Deletion -406 bases @ 437980 | |||||
Origin | From_laboratory | RW | ||||
Species | Caenorhabditis brenneri | |||||
Properties | Genomic_canonical | |||||
Checksum | MD5 | 3e6141eb1bad3bcdeb0077edd7056cbb | ||||
Method | Genomic_canonical |