WormBase Tree Display for Sequence: F19H6

F19H6 DNA: F19H6 29612
  SMap: S_child: Gene_child: WBGene00008960 3209 1988
        WBGene00195563 26849 26997
        WBGene00008957 16698 12527
        WBGene00008959 3993 5560
        WBGene00008958 9726 6757
        WBGene00196839 8095 8299
        WBGene00014340 6018 5947
      CDS_child: F19H6.2 16655 12840
        F19H6.2:wp223 14225 12840
        F19H6.3 9726 6757
        F19H6.3:wp196 9726 6319
        F19H6.4 3993 5420
        F19H6.5 3062 2020
        F19H6.5:wp109 3062 1989
        F19H6.6 766 1407
        F19H6.7:wp223 16655 16139
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g57_x25_X_m 29364 28103
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g5n11_x25_X_p 3993 5417
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g98_x25_X_m 8130 8015
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g35_x25_X_m 29558 29431
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g180_x25_X_m 8565 8461
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g129_x25_X_m 16221 16141
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g29_x25_X_m 16655 12909
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g15_x25_X_m 29364 28103
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g58_x25_X_m 14132 12849
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g22_x25_X_m 29223 28103
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g63_x25_X_m 16625 16142
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g84_x25_X_m 13600 12852
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g94_x25_X_m 29504 29407
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g74_x25_X_m 16234 14145
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g18_x25_X_m 29364 28103
        RNASEQ_embryo_him-8_20dC_post-L1_g19n11_x25_X_p 3993 5417
        RNASEQ_embryo_him-8_20dC_post-L1_g51_x25_X_m 28462 28103
        RNASEQ_embryo_him-8_20dC_post-L1_g66_x25_X_m 29223 28484
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g51n11_x25_X_m 16655 13830
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g9_x25_X_m 3062 2023
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g19_x25_X_p 766 1404
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g101_x25_X_m 13651 12948
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g14n11_x25_X_p 3993 5417
        RNASEQ_L4_soma_JK1107_no_DNaseI_g120_x25_X_p 5185 5467
        RNASEQ_L4_soma_JK1107_no_DNaseI_g48n11_x25_X_m 14132 12933
        RNASEQ_L4_soma_JK1107_no_DNaseI_g55n11_x25_X_m 16655 14025
        RNASEQ_L4_soma_JK1107_no_DNaseI_g131_x25_X_p 4427 5054
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g26n11_x25_X_m 16655 12843
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g54_x25_X_p 5179 5476
        RNASEQ_early_embryo_g73_x25_X_m 14132 13706
        RNASEQ_early_embryo_g18n11_x25_X_p 3993 5417
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g57_x25_X_p 5018 5417
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g73_x25_X_m 14132 12843
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g24n11_x25_X_m 16655 12843
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g90_x25_X_p 766 1041
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g102_x25_X_p 1090 1227
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g80_x25_X_m 14132 13535
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g108_x25_X_m 12934 12854
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g113_x25_X_m 13865 13697
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g28_x25_X_m 29558 28103
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g76_x25_X_m 14132 13869
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g68_x25_X_m 13651 12843
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g142_x25_X_m 12959 12879
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g172_x25_X_p 5354 5443
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g131_x25_X_m 16622 16145
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g154_x25_X_m 13829 13652
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g35_x25_X_m 29558 28103
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g63_x25_X_m 29025 28103
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g2n11_x25_X_p 3993 5417
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g88_x25_X_m 8667 8298
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g64_x25_X_m 7659 7078
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g155_x25_X_m 16219 14163
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g99_x25_X_m 8111 7951
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g136_x25_X_m 16622 16259
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g176_x25_X_m 9296 9142
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g66_x25_X_m 28498 28109
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g4n11_x25_X_p 3993 5417
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g83_x25_X_m 29364 29236
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g177_x25_X_m 13600 13532
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g154_x25_X_m 9597 9547
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g72_x25_X_m 8258 8136
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g86_x25_X_m 7224 7018
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g124_x25_X_m 8097 7958
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g56_x25_X_m 29223 28103
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g125_x25_X_m 13931 13697
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g45n11_x25_X_m 16655 14118
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g140_x25_X_m 13651 12933
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g164_x25_X_m 2538 2437
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g22n11_x25_X_p 3993 5417
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g195_x25_X_m 9245 9142
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g15n11_x25_X_p 3993 5417
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g92_x25_X_m 14132 14040
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g74_x25_X_m 29025 28103
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g83_x25_X_m 12934 12839
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g175_x25_X_m 9296 9142
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g102_x25_X_m 7224 7048
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g43n11_x25_X_m 16655 14100
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g102_x25_X_m 13931 13604
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g12n11_x25_X_p 3993 5417
        F19H6.gc1 3062 2020
        F19H6.gc2 4014 5420
        F19H6.gc3 9726 6559
        F19H6.gc4 16655 12840
        F19H6.gc5 29431 28100
        ContigX.elegans.jigsaw.2001.mRNA2001 3766 5562
        ContigX.elegans.jigsaw.2002.mRNA2002 9785 6244
        ContigX.elegans.jigsaw.2000.mRNA2000 3295 1974
        ContigX.elegans.jigsaw.1999.mRNA1999 465 1429
        ContigX.elegans.jigsaw.2003.mRNA2003 14275 12526
        AG1201_F19H6.6.T1 766 1407
        AG1201_F19H6.5.T1 3062 2020
        AG1201_F19H6.4.T1 3993 5420
        AG1201_F19H6.3.T1 9726 6757
        AG1201_F19H6.2.T1 16655 12840
        AG1201_F19H6.1.T3 28498 28100
      Transcript: F19H6.8 26849 26997
        F19H6.9 8095 8299
        F19H6.t1 6018 5947
        F19H6.2.1 16698 12527
        F19H6.3.1 9726 6757
        F19H6.4.1 3993 5560
        F19H6.5.1 3209 1988
      Transposon: WBTransposon00000106 10971 10094
      PCR_product (20)
      Allele (470)
      Oligo_set: Aff_F19H6.1 29400 28209
        Aff_F19H6.2 14129 12840
        Aff_F19H6.3 7353 6319
        Aff_F19H6.4 4125 5420
        Aff_F19H6.5 2987 1989
        Aff_F19H6.6 766 1407
      Feature_object (160)
      Feature_data: F19H6:Polysome 1 29612
        F19H6:TranscriptionallyActiveRegion 1 29612
        F19H6:ChIPSeqTF 1 29612
        F19H6:TRF 1 29612
        F19H6:Dust 1 29612
        F19H6:inverted 1 29612
      Homol_data (20)
  Structure: From: Source: CHROMOSOME_X
    Overlap_right: F17E5 29513
    Overlap_left: F42F12
    Clone_left_end: F19H6 1
      F17E5 29513
    Clone_right_end: F42F12 15535
  DB_info: Database: EMBL NDB_AC Z68115
        NDB_SV Z68115.1
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: McMurray AA
    From_laboratory: HX
    Date_directory: 950405
    Species: Caenorhabditis elegans
    Strain: WBStrain00000001
  Visible: Clone: F19H6
    Reference: WBPaper00015215
  Properties: Genomic_canonical
    Checksum: MD5: 23c82492de05ab039949e8a03fb62649
    Status: Finished: 05 Apr 1995 00:00:00
      Submitted: 25 Nov 1995 00:00:00
      Annotated: 24 Nov 1995 00:00:00
  Map: Sequence-X Ends: Left: 6678
        Right: 6700
  Interpolated_map_position: X 7.03441
  Assembly_tags: Clone left end 1 4 left hand end of F19H6
          Beginning of F19H6
      29513 29516 Beginning of F17E5
    annotation 10020 10035 no + strand bases 10020 - 10034 (16b) but terminator on the -ve strand
      18287 18356 Approx 70 bp missing - d.s. (caused by sequence dying after run of Gs) but available strand (+) is terminated.
      18338 18358 Run of 21 Gs : fairly confident of the number. Some + reads go through the run but no - reads
      18359 18412 Region of very poor quality d.s. (+) following run of 21 Gs. Terminator on both available strands but of poor quality (approx. 50 bp).
    Clone right end 15532 15535 End of F42F12
  Method: Genomic_canonical