WormBase Tree Display for Sequence: W09C3

W09C3 DNA: W09C3 23793
  SMap: S_child: Gene_child: WBGene00021114 19659 18496
        WBGene00021115 21722 21146
        WBGene00021109 21723 23785
        WBGene00219746 3786 7042
        WBGene00021110 15590 17752
        WBGene00021111 10752 13059
        WBGene00021112 8780 10061
        WBGene00021113 14888 13435
      CDS_child: W09C3.1 21799 23751
        W09C3.1:wp148 22087 23751
        W09C3.2 15604 17622
        W09C3.2:wp281 15604 17622
        W09C3.3 10940 12938
        W09C3.3:wp124 11412 12938
        W09C3.3:wp221 12277 12938
        W09C3.4 8798 9889
        W09C3.6 14597 13532
        W09C3.7 19337 18558
        W09C3.8 21617 21176
        W09C3.8:wp148 21800 20235
        W09C3.8:wp274 21617 20235
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g83n11_x10_I_m 6189 5900
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g92s1k86_x10_I_m 18943 18850
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g52n11_x10_I_p 8798 9886
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g173_x10_I_m 14856 14578
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g92_x10_I_m 19337 18561
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g55n11_x10_I_p 8798 9886
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g107_x10_I_p 19087 19905
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g183_x10_I_m 12343 12236
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g172_x10_I_p 9300 9470
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g100n11_x10_I_p 8798 9212
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g92_x10_I_m 1743 889
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g76_x10_I_m 18281 17154
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g159_x10_I_p 9446 9669
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g123_x10_I_p 9014 9140
        RNASEQ_embryo_him-8_20dC_post-L1_g119_x10_I_p 20642 21138
        RNASEQ_embryo_him-8_20dC_post-L1_gD1007.13a 10326 10751
        RNASEQ_embryo_him-8_20dC_post-L1_g197_x10_I_p 751 1036
        RNASEQ_embryo_him-8_20dC_post-L1_g57n11_x10_I_p 8798 9886
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g37_x10_I_p 15604 17619
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g165_x10_I_p 9453 9700
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g121_x10_I_p 10940 12336
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g161_x10_I_p 12692 12905
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g133_x10_I_p 22296 22415
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g171_x10_I_p 12403 12498
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g50_x10_I_m 21617 21179
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g11_x10_I_m 19337 18561
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g47_x10_I_m 14883 14575
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g119_x10_I_m 14285 13846
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g82_x10_I_m 13713 13535
        RNASEQ_L4_soma_JK1107_no_DNaseI_g142_x10_I_m 1743 219
        RNASEQ_L4_soma_JK1107_no_DNaseI_g123_x10_I_m 19337 18561
        RNASEQ_L4_soma_JK1107_no_DNaseI_g167_x10_I_m 2610 1849
        RNASEQ_L4_soma_JK1107_no_DNaseI_g49n11_x10_I_p 8798 9664
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g152_x10_I_p 10979 11811
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g137_x10_I_p 12277 12366
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g90_x10_I_p 8798 9886
        RNASEQ_early_embryo_g74_x10_I_p 8798 9886
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g136_x10_I_p 12487 12676
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g74_x10_I_p 8798 9886
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g159_x10_I_p 12296 12400
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g153_x10_I_p 10940 11017
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g147_x10_I_p 12487 12860
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g154_x10_I_p 11791 12018
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g49n11_x10_I_p 8798 9886
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g70_x10_I_m 18440 14165
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g101_x10_I_m 22927 22467
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g141_x10_I_p 12692 12833
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g137_x10_I_p 12277 12408
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g150_x10_I_p 12487 12658
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g58n11_x10_I_p 8798 9886
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g5n11_x10_I_m 2809 2750
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g92n11_x10_I_p 3103 4500
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g46n11_x10_I_p 8798 9886
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g153_x10_I_m 14167 14013
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g192_x10_I_p 16674 16881
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g157_x10_I_p 12487 12543
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g34n11_x10t1_I_m 6189 5900
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g188_x10_I_p 2530 3675
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g194_x10_I_p 1769 2131
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g71_x10_I_m 14025 13846
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g68_x10_I_m 14856 14575
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g111_x10_I_p 15604 17619
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g46n11_x10_I_p 8798 9820
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g123_x10_I_m 21319 21179
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g161_x10_I_m 13592 13455
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g30_x10_I_m 19337 18561
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g157_x10_I_m 2610 1849
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g5n11_x10_I_m 2809 2750
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g62n11_x10_I_m 19337 18561
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g176_x10_I_m 14856 14584
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g201_x10_I_m 21488 21365
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g182_x10_I_p 16610 16844
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g139_x10_I_p 15604 15776
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g42n11_x10_I_p 8798 9886
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g35n11_x10_I_m 8660 5350
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_gC44E4.8 1672 2370
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g204_x10_I_m 14856 14584
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g53n11_x10_I_p 8798 9886
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g206_x10_I_m 14164 14016
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g207_x10_I_m 13592 13473
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g81n11_x10_I_m 19337 18585
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g181_x10_I_p 16607 16672
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g43n11_x10_I_m 19337 18561
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g69n11_x10_I_m 2610 1777
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g206_x10_I_m 14859 14587
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g49n11_x10_I_p 8798 9886
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g195_x10_I_p 12081 12137
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g46n11_x10_I_p 8798 9886
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g50n11_x10_I_m 19337 18561
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g6n11_x10t1_I_p 1922 3211
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_gC44E4.8 1672 2370
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g1n11s1k71_x10t1_I_p 1283 1408
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g172_x10_I_p 12493 12540
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g124_x10_I_p 15604 15776
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g164_x10_I_p 12344 12424
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g114_x10_I_m 14877 14575
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g150_x10_I_m 13592 13455
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g116_x10_I_m 21319 21179
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g131_x10_I_p 16583 17619
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g38n11_x10_I_p 8798 9886
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g34m1_x10_I_m 18943 18850
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g181_x10_I_p 22296 22352
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g34_x10_I_m 19337 18561
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g119_x10_I_m 14025 13846
        W09C3.gc1 2034 95
        W09C3.gc2 8798 9889
        W09C3.gc3 10940 12938
        W09C3.gc4 14597 13532
        W09C3.gc5 15604 17622
        W09C3.gc6 19337 18558
        W09C3.gc7 21800 19942
        W09C3.gc8 21965 23747
        ContigI.elegans.jigsaw.711.mRNA711 14606 13437
        ContigI.elegans.jigsaw.714.mRNA714 21646 21149
        ContigI.elegans.jigsaw.713.mRNA713 21005 18497
        ContigI.elegans.jigsaw.710.mRNA710 11237 13063
        ContigI.elegans.jigsaw.715.mRNA715 21747 23786
        ContigI.elegans.jigsaw.712.mRNA712 13655 17768
        ContigI.elegans.jigsaw.709.mRNA709 8527 10049
        AG1201_RIT1M.1766.T1 4036 3746
        AG1201_RIT1P.1600.T1 6933 7112
        AG1201_W09C3.4.T1 8798 9889
        AG1201_W09C3.3.T2 10940 12823
        AG1201_W09C3.3.T1 10940 12938
        AG1201_W09C3.6.T1 14597 13532
        AG1201_W09C3.2.T1 15604 17622
        AG1201_W09C3.7.T2 18943 18558
        AG1201_W09C3.7.T1 19337 18558
        AG1201_W09C3.8.T2 21319 21176
        AG1201_W09C3.8.T1 21617 21176
        AG1201_W09C3.1.T2 21799 23751
        AG1201_W09C3.1.T1 22296 23751
      Transcript: W09C3.9 3786 7042
        W09C3.1.1 21723 23785
        W09C3.2.1 15590 17752
        W09C3.3.1 10752 13059
        W09C3.4.1 8780 10061
        W09C3.6.1 14888 13435
        W09C3.6.2 14616 13435
        W09C3.7.1 19659 18496
        W09C3.8.1 21722 21146
      Nongenomic: yk363h7 18565 19613
        yk385e11 13506 14843
      PCR_product (25)
      Allele (244)
      Oligo_set: Aff_W09C3.2 16842 17622
        Aff_W09C3.3 11995 12938
        Aff_W09C3.4 9141 9889
        Aff_W09C3.6 14279 13532
        Aff_W09C3.7 19337 18558
        Aff_W09C3.8 21235 20235
      Feature_object (268)
      Feature_data: W09C3:Polysome 1 23793
        W09C3:TranscriptionallyActiveRegion 1 23793
        W09C3:ChIPSeqTF 1 23793
        W09C3:TRF 1 23793
        W09C3:Dust 1 23793
        W09C3:inverted 1 23793
      Homol_data (18)
  Structure: From: Source: CHROMOSOME_I
    Overlap_right: C10H11 22594
    Overlap_left: T04D1
    Clone_left_end: C10H11 22594
      W09C3 1
    Clone_right_end: T04D1 17606
      W09C3 23363
  DB_info: Database: EMBL NDB_AC FO080504
        NDB_ID _U88178
        NDB_SV FO080504.1
    Secondary_accession: U88178
    DB_remark: The 5' clone is T04D1, 2100 bp overlap; the 3' clone is C10H11, 1200 bp overlap. Actual start of this clone is at base position 1 of W09C3; actual end is at 23363 of W09C3.
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Wamsley P
      Kramer J
    From_laboratory: RW
    Date: 09 Aug 1996 00:00:00
    Date_directory: 960807
    Species: Caenorhabditis elegans
  Visible: Clone: W09C3
  Properties: Genomic_canonical
    Checksum: MD5: fc482b246fddf3645d9a02d8dab79a0c
    Status: Shotgun
      Finished
      Submitted: 09 Aug 1996 00:00:00
  Map: Sequence-I
  Interpolated_map_position: I -0.851524
  Method: Genomic_canonical