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WormBase Tree Display for Sequence: Y37D8A

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Name Class

Y37D8ADNAY37D8A133099
SMapS_childGene_child (27)
CDS_child (683)
Transcript (40)
TransposonWBTransposon000000394986248252
WBTransposon000005317853178381
Genomic_non_canonicalWRM068cA024052566097
WRM0613dH081202644593
WRM0615bF053989067967
WRM0619dH03845039860
Nongenomicyk215b12034722031
yk271b32172821954
yk372f55813358813
yk387h9128608132548
[cgc5292]:mrg-15436657742
PCR_productTH:321E8_16204263172
TH:321E8_26204263172
TH:321E8_36204263172
TH:323A75009550799
TH:323G63704838413
TH:323H64815449751
TH:324E3411656
TH:325A33971741135
TH:325C85605357688
TH:325D98820789870
TH:325E9120619122300
TH:325G248736548
TH:325H22040222029
TH:326F9112784114784
TH:329e55791858768
TH:330B399740100426
TH:330C4112725115185
TH:331F5104489104896
TH:331F5_1104333104896
TH:335-b46197362881
TH:335B4_16197462880
TH:335B4_26197462880
TH:335B4_36197462880
TH:335B4_46197462880
TH:335H11108582109671
TH:335H11_1107864109671
TH:338H51253014891
TH:339B31232014803
TH:340H115586656129
TH:341f115825858710
cenix:232-a8114773114947
cenix:232-h7114302114476
cenix:235-a106322063368
cenix:321-e86204163173
cenix:322-b17220573057
cenix:322-e3130880132488
cenix:323-a75009450800
cenix:323-g63704738414
cenix:323-h64815349752
cenix:324-e3401657
cenix:325-a33971641136
cenix:325-c85605257689
cenix:325-d98820689871
cenix:325-e9120618122301
cenix:325-f25963960986
cenix:325-g248726549
cenix:325-h22040122030
cenix:326-f9112783114785
cenix:329-e55791758769
cenix:330-b399739100427
cenix:330-c4112724115186
cenix:330-h29460297042
cenix:331-f5104488104897
cenix:331-f5_1104332104897
cenix:335-b46197362881
cenix:335-h11108581109672
cenix:335-h11_1107863109672
cenix:338-h51252914892
cenix:339-b31231914804
cenix:340-h115586656129
cenix:341-f115825858710
mv_AAC474446428274692
mv_AAD19958125748132798
mv_CAA25498_124852049338
mv_CAA25499_124892149256
mv_F59C6.1_124852049502
mv_G_YK1732111562114946
mv_G_YK19299474197824
mv_G_YK59495895560662
mv_Y37D8A.1141181
mv_Y37D8A.105811858711
mv_Y37D8A.126174563545
mv_Y37D8A.148858389489
mv_Y37D8A.1698385101755
mv_Y37D8A.17104617109067
mv_Y37D8A.18109647110869
mv_Y37D8A.19112979114471
mv_Y37D8A.233458696
mv_Y37D8A.22117806123856
mv_Y37D8A.31245720214
mv_Y37D8A.42052422038
mv_Y37D8A.53718338683
mv_Y37D8A.64004040981
mv_Y37D8A.85015650578
mv_Y37D8A.95460657739
mv_Y48C3A.2_124852049589
mv_Y48G9A.k_124852049502
mv_ZC334.4_124852049502
sjj_C31A11.8_104832949477
sjj_F18C5.7_124851949477
sjj_F46F5.17_94832949477
sjj_F59C6.1_124870949752
sjj_K01G5.3_16256963744
sjj_R173.2_134851949477
sjj_T27F6.3_124875849752
sjj_T28A11.14_104832949477
sjj_W03G9.3_26247463661
sjj_Y37D8A.105778058755
sjj_Y37D8A.115969060735
sjj_Y37D8A.126204163173
sjj_Y37D8A.136643667512
sjj_Y37D8A.148854189616
sjj_Y37D8A.159319094139
sjj_Y37D8A.1698151100011
sjj_Y37D8A.18109197110868
sjj_Y37D8A.19112851114531
sjj_Y37D8A.263868408
sjj_Y37D8A.21112732114909
sjj_Y37D8A.22117627119736
sjj_Y37D8A.23130947132861
sjj_Y37D8A.31258814846
sjj_Y37D8A.42042622116
sjj_Y37D8A.53715738126
sjj_Y37D8A.63998741090
sjj_Y37D8A.74851949649
sjj_Y37D8A.84995450946
sjj_Y37D8A.95567857802
sjj_Y39F10A.4_124851849477
sjj_Y94A7B.2_134851849477
sjj_ZK1251.4_104832949477
smd_B0213.1_134870949752
smd_C03E10.2_134870949752
smd_C28F5.5_114875849858
smd_C31A11.8:2_134870949752
smd_F18C5.7:2_124851949477
smd_F18C5.7_114825649752
smd_F46F5.17:2_94832949477
smd_F46F5.17_124825649395
smd_F59C6.1_124870949752
smd_R173.2_134851949477
smd_T21B4.11_124877149752
smd_T27F6.3_124875849752
smd_T28A11.14:2_104832949477
smd_T28A11.14_134875849752
smd_Y37D8A.115963960748
smd_Y37D8A.74857549752
smd_Y37D8A.7:24851949649
smd_Y39F10A.4_124851849477
smd_Y94A7B.2:2_134851849477
smd_Y94A7B.2_134875849752
smd_ZC334.4_124870949752
smd_ZK1251.4:2_104832949477
smd_ZK1251.4_134870949752
smd_ZK250.4_124875849752
Allele (2400)
Oligo_set (19)
Feature_object (1260)
Feature_dataY37D8A:Polysome1133099
Y37D8A:TranscriptionallyActiveRegion1133099
Y37D8A:ChIPSeqTF1133099
Y37D8A:TRF1133099
Y37D8A:Dust1133099
Y37D8A:inverted1133099
Homol_data (21)
StructureFromSourceCHROMOSOME_III
Overlap_rightY39E4A132994
Overlap_leftBE10
Clone_left_endY39E4132994
Y37D8A1
Clone_right_endBE10104
Y37D8A133099
DB_infoDatabaseEMBLNDB_ACAL032626
NDB_SVAL032626.2
Secondary_accessionZ92819
DB_remark[060419 pad] Sequence updated to reflect 357 bp of genomic sequence that was never submitted to embl of incorporated in the released assembly.
KeywordHTG
EMBL_dump_infoEMBL_dump_methodworm_EMBL-dump
OriginFrom_authorBarlow K
From_laboratoryHX
Date_directory981030
SpeciesCaenorhabditis elegans
StrainWBStrain00000001
VisibleCloneY37D8A
RemarkTransposon Y37D8A.24 converted into an S_Child [020208 kj]
PropertiesGenomic_canonical
ChecksumMD56767224e0f9b7ef9f8ca43e22e248cec
StatusFinished30 Oct 1998 00:00:00
Submitted29 Oct 1998 00:00:00
Annotated01 Jan 1980 00:00:00
MapSequence-III
Interpolated_map_positionIII19.2637
Assembly_tagsFinished Left14Y37D8A
Clone right end101104BE10
annotation131122131124
First select a Feature -
[ ] Unsure
[X] Misc_feature
Then select the text for the note(s) -
[ ] Tandem repeat
[ ] Single clone region
[ ] Forced join
[X] Other
Add a comment here -
The overlapping clone Y111B2 reads GGG at this point.
5620156974First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Dispersed IR-2 inverted repeat similar to sequence U86947. Repeat is flanked by a tandem duplication of the sequence GTACT.
8629387083First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Dispersed IR-2 inverted repeat similar to sequence U86947. Repeat is flanked by a tandem duplication of the sequence ACATT.
106343107171First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Dispersed IR-2 inverted repeat similar to sequence U86947. This copy of the repeat does not have a flanking duplicated sequence.This copy also contains a region which is covered only by one subclone.
116311116808First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Dispersed IR-2 inverted repeat similar to sequence U86947. In this copy the arms are shorter by approximately bp also there is no flanking duplication of sequence. The sequence which gives rise to the shortened version of this repeat is derived from subclones from two yac clones.
Finished Right133094133099Y37D8A
Clone left end132999132994Y39E4
MethodGenomic_canonical