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WormBase Tree Display for Sequence: Y37D8A

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Name Class

Y37D8ADNAY37D8A133099
SMapS_childGene_child (27)
CDS_child (683)
TranscriptY37D8A.12b6174463547
Y37D8A.274159341470
Y37D8A.2848504700
Y37D8A.30121122120998
Y37D8A.10.15811758869
Y37D8A.11a.16066358869
Y37D8A.11b.16066358953
Y37D8A.12a.16128263787
Y37D8A.13.17482464129
Y37D8A.14.18857789705
Y37D8A.15.19359697869
Y37D8A.16.110176198204
Y37D8A.17a.1109083103392
Y37D8A.17b.1109082103352
Y37D8A.17c.1108882104615
Y37D8A.17d.1107262104615
Y37D8A.18.1109643110972
Y37D8A.19.1112959114521
Y37D8A.2.132798737
Y37D8A.21.1114953111456
Y37D8A.22a.1117803124155
Y37D8A.22b.1117803125374
Y37D8A.22c.1119159125371
Y37D8A.22d.1119183123858
Y37D8A.23a.1125737132969
Y37D8A.23b.1125747132917
Y37D8A.23c.1125775132800
Y37D8A.25.133391744
Y37D8A.26.13981438930
Y37D8A.29.17476674725
Y37D8A.3.11245420360
Y37D8A.4.12204920275
Y37D8A.5.13858037135
Y37D8A.5.23841137136
Y37D8A.6.14099739919
Y37D8A.6.25338339916
Y37D8A.6.35261839916
Y37D8A.8.14803450705
Y37D8A.9a.15774254115
Y37D8A.9b.15774054360
TransposonWBTransposon000000394986248252
WBTransposon000005317853178381
Genomic_non_canonicalWRM068cA024052566097
WRM0613dH081202644593
WRM0615bF053989067967
WRM0619dH03845039860
Nongenomicyk215b12034722031
yk271b32172821954
yk372f55813358813
yk387h9128608132548
[cgc5292]:mrg-15436657742
PCR_product (144)
Allele (2400)
Oligo_set (19)
Feature_object (1260)
Feature_dataY37D8A:Polysome1133099
Y37D8A:TranscriptionallyActiveRegion1133099
Y37D8A:ChIPSeqTF1133099
Y37D8A:TRF1133099
Y37D8A:Dust1133099
Y37D8A:inverted1133099
Homol_data (21)
StructureFromSourceCHROMOSOME_III
Overlap_rightY39E4A132994
Overlap_leftBE10
Clone_left_endY39E4132994
Y37D8A1
Clone_right_endBE10104
Y37D8A133099
DB_infoDatabaseEMBLNDB_ACAL032626
NDB_SVAL032626.2
Secondary_accessionZ92819
DB_remark[060419 pad] Sequence updated to reflect 357 bp of genomic sequence that was never submitted to embl of incorporated in the released assembly.
KeywordHTG
EMBL_dump_infoEMBL_dump_methodworm_EMBL-dump
OriginFrom_authorBarlow K
From_laboratoryHX
Date_directory981030
SpeciesCaenorhabditis elegans
StrainWBStrain00000001
VisibleCloneY37D8A
RemarkTransposon Y37D8A.24 converted into an S_Child [020208 kj]
PropertiesGenomic_canonical
ChecksumMD56767224e0f9b7ef9f8ca43e22e248cec
StatusFinished30 Oct 1998 00:00:00
Submitted29 Oct 1998 00:00:00
Annotated01 Jan 1980 00:00:00
MapSequence-III
Interpolated_map_positionIII19.2637
Assembly_tagsFinished Left14Y37D8A
Clone right end101104BE10
annotation131122131124
First select a Feature -
[ ] Unsure
[X] Misc_feature
Then select the text for the note(s) -
[ ] Tandem repeat
[ ] Single clone region
[ ] Forced join
[X] Other
Add a comment here -
The overlapping clone Y111B2 reads GGG at this point.
5620156974First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Dispersed IR-2 inverted repeat similar to sequence U86947. Repeat is flanked by a tandem duplication of the sequence GTACT.
8629387083First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Dispersed IR-2 inverted repeat similar to sequence U86947. Repeat is flanked by a tandem duplication of the sequence ACATT.
106343107171First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Dispersed IR-2 inverted repeat similar to sequence U86947. This copy of the repeat does not have a flanking duplicated sequence.This copy also contains a region which is covered only by one subclone.
116311116808First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Dispersed IR-2 inverted repeat similar to sequence U86947. In this copy the arms are shorter by approximately bp also there is no flanking duplication of sequence. The sequence which gives rise to the shortened version of this repeat is derived from subclones from two yac clones.
Finished Right133094133099Y37D8A
Clone left end132999132994Y39E4
MethodGenomic_canonical