WormBase Tree Display for Sequence: Y54G2A

Y54G2A DNA: Y54G2A 286680
  SMap: S_child: Gene_child (79)
      CDS_child (1495)
      Transcript: Y54G2A.39c 73585 77795
        Y54G2A.53:wp212 43925 43905
        Y54G2A.54 33221 33241
        Y54G2A.55 72475 72455
        Y54G2A.56 93678 93658
        Y54G2A.58 140622 140421
        Y54G2A.59 231081 231030
        Y54G2A.60 233733 233630
        Y54G2A.61 253994 254102
        Y54G2A.62 244784 244925
        Y54G2A.63 254102 253994
        Y54G2A.64 245817 245965
        Y54G2A.65 49960 49869
        Y54G2A.66 247136 247431
        Y54G2A.67 264720 264453
        Y54G2A.68 248647 248499
        Y54G2A.69 248548 248696
        Y54G2A.70 55487 55401
        Y54G2A.71 231030 231081
        Y54G2A.74 88900 89026
        Y54G2A.78 278721 278223
        Y54G2A.79 245352 245028
        Y54G2A.80 99506 99908
        Y54G2A.t1 49878 49949
        Y54G2A.t2 52116 52187
        Y54G2A.t3 55406 55477
        Y54G2A.t4 58134 58205
        Y54G2A.t5 51001 50930
        Y54G2A.1.1 269517 273083
        Y54G2A.10a.1 49468 50818
        Y54G2A.10b.1 49485 50760
        Y54G2A.10b.2 50126 50757
        Y54G2A.11a.1 21569 15494
        Y54G2A.11b.1 21571 15498
        Y54G2A.11b.2 20890 15498
        Y54G2A.11b.3 19624 15498
        Y54G2A.12.1 32622 27002
        Y54G2A.13.1 69512 64347
        Y54G2A.14.1 90464 89157
        Y54G2A.14.2 91251 89150
        Y54G2A.15.1 93761 92982
        Y54G2A.16a.1 106894 105374
        Y54G2A.16b.1 114622 105374
        Y54G2A.16c.1 105951 105480
        Y54G2A.17a.1 140230 121802
        Y54G2A.17a.2 135116 121802
        Y54G2A.17a.3 132127 121802
        Y54G2A.17b.1 135071 122003
        Y54G2A.17c.1 132082 131366
        Y54G2A.18.1 142274 141339
        Y54G2A.19.1 144509 143593
        Y54G2A.22.1 172022 169606
        Y54G2A.23.1 178200 177296
        Y54G2A.25a.1 228263 214113
        Y54G2A.25b.1 228177 222086
        Y54G2A.26a.1 245251 235829
        Y54G2A.26b.1 242247 236498
        Y54G2A.26c.1 239008 236498
        Y54G2A.28a.1 262200 259365
        Y54G2A.28b.1 261047 259240
        Y54G2A.28c.1 259551 259418
        Y54G2A.29.1 278721 273182
        Y54G2A.2a.1 38471 46584
        Y54G2A.2b.1 38468 46592
        Y54G2A.2c.1 43208 46379
        Y54G2A.2d.1 45487 46379
        Y54G2A.31.1 175470 172370
        Y54G2A.32.1 53787 54585
        Y54G2A.32.2 53731 54692
        Y54G2A.33.1 92253 95381
        Y54G2A.33.2 92241 95384
        Y54G2A.35a.1 209902 214174
        Y54G2A.35b.1 209877 214180
        Y54G2A.36.1 147475 151427
        Y54G2A.36.2 147475 151427
        Y54G2A.36.3 147473 151430
        Y54G2A.36.4 147473 151429
        Y54G2A.36.5 147883 151430
        Y54G2A.37.1 70487 73321
        Y54G2A.38.1 9242 11862
        Y54G2A.39a.1 73525 75426
        Y54G2A.39b.1 75151 77848
        Y54G2A.3a.1 262366 264219
        Y54G2A.3b.1 262387 264217
        Y54G2A.4.1 181182 186622
        Y54G2A.40.1 96255 101061
        Y54G2A.41.1 1647 3242
        Y54G2A.44.1 51637 53062
        Y54G2A.45a.1 55636 58813
        Y54G2A.45b.1 56688 58766
        Y54G2A.45c.1 57718 58766
        Y54G2A.46.1 82685 83158
        Y54G2A.47.1 84595 85065
        Y54G2A.48.1 82466 81256
        Y54G2A.49a.1 102644 101470
        Y54G2A.49b.1 103043 101470
        Y54G2A.50.1 168220 169462
        Y54G2A.50.2 168220 169458
        Y54G2A.50.3 167808 169563
        Y54G2A.52.1 48465 46840
        Y54G2A.57.1 219719 223245
        Y54G2A.5a.1 136815 139030
        Y54G2A.5b.1 136734 138815
        Y54G2A.5c.1 137197 138800
        Y54G2A.6a.1 100665 105235
        Y54G2A.6b.1 104561 105199
        Y54G2A.7.1 88387 89211
        Y54G2A.72.1 27920 28350
        Y54G2A.73a.1 258671 250320
        Y54G2A.73b.1 251453 250320
        Y54G2A.75.1 140661 141415
        Y54G2A.76.1 59189 62636
        Y54G2A.77.1 12459 15391
        Y54G2A.8a.1 85443 88502
        Y54G2A.8b.1 85493 88294
      Pseudogene: Y54G2A.20 150417 146747
        Y54G2A.21 164595 152215
        Y54G2A.24 189641 187769
        Y54G2A.42 28890 30445
      Transposon: WBTransposon00000722 159712 152551
      Genomic_non_canonical (12)
      Nongenomic: yk151d6 273223 278345
        yk178a7 236329 241895
        yk229c12 138376 141278
        yk253f1 49513 50697
      PCR_product (106)
      Allele (5253)
      Oligo_set (52)
      Feature_object (1976)
      Feature_data: Y54G2A:Polysome 1 286680
        Y54G2A:TranscriptionallyActiveRegion 1 286680
        Y54G2A:ChIPSeqTF 1 286680
        Y54G2A:TRF 1 286680
        Y54G2A:Dust 1 286680
        Y54G2A:inverted 1 286680
      Homol_data (22)
  Structure: From: Source: CHROMOSOME_IV
    Overlap_right: Y67D8C 282481
    Overlap_left: Y94H6A
    Clone_left_end: Y54G2 1
      Y67D8 199737
      Y54G2A 1
    Clone_right_end: Y54G2 286680
      Y54G2A 286680
  DB_info: Database: EMBL NDB_AC FO081809
        NDB_ID _AC024817
        NDB_SV FO081809.2
    Secondary_accession: AC024817
    DB_remark: The 5' clone is Y94H6A, 200 bp overlap; the 3' clone is Y67D8C, 4200 bp overlap.
      [121025] Sequence correction: SNP 0 bases @ 248905
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author (2)
    From_laboratory: RW
    Date: 17 Dec 1999 00:00:00
    Date_directory
    Species: Caenorhabditis elegans
  Visible: Clone: Y54G2A
  Properties: Genomic_canonical
    Checksum: MD5: 2a5fecbc050dd8e7e490ac288114c6bc
    Status: Finished
      Submitted: 17 Dec 1999 00:00:00
  Map: Sequence-IV
  Interpolated_map_position: IV -6.72319
  Method: Genomic_canonical