WormBase Tree Display for Sequence: Y54G2A
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Y54G2A | DNA | Y54G2A | 286680 | |||
---|---|---|---|---|---|---|
SMap | S_child | Gene_child (79) | ||||
CDS_child (1495) | ||||||
Transcript | Y54G2A.39c | 73585 | 77795 | |||
Y54G2A.53:wp212 | 43925 | 43905 | ||||
Y54G2A.54 | 33221 | 33241 | ||||
Y54G2A.55 | 72475 | 72455 | ||||
Y54G2A.56 | 93678 | 93658 | ||||
Y54G2A.58 | 140622 | 140421 | ||||
Y54G2A.59 | 231081 | 231030 | ||||
Y54G2A.60 | 233733 | 233630 | ||||
Y54G2A.61 | 253994 | 254102 | ||||
Y54G2A.62 | 244784 | 244925 | ||||
Y54G2A.63 | 254102 | 253994 | ||||
Y54G2A.64 | 245817 | 245965 | ||||
Y54G2A.65 | 49960 | 49869 | ||||
Y54G2A.66 | 247136 | 247431 | ||||
Y54G2A.67 | 264720 | 264453 | ||||
Y54G2A.68 | 248647 | 248499 | ||||
Y54G2A.69 | 248548 | 248696 | ||||
Y54G2A.70 | 55487 | 55401 | ||||
Y54G2A.71 | 231030 | 231081 | ||||
Y54G2A.74 | 88900 | 89026 | ||||
Y54G2A.78 | 278721 | 278223 | ||||
Y54G2A.79 | 245352 | 245028 | ||||
Y54G2A.80 | 99506 | 99908 | ||||
Y54G2A.t1 | 49878 | 49949 | ||||
Y54G2A.t2 | 52116 | 52187 | ||||
Y54G2A.t3 | 55406 | 55477 | ||||
Y54G2A.t4 | 58134 | 58205 | ||||
Y54G2A.t5 | 51001 | 50930 | ||||
Y54G2A.1.1 | 269517 | 273083 | ||||
Y54G2A.10a.1 | 49468 | 50818 | ||||
Y54G2A.10b.1 | 49485 | 50760 | ||||
Y54G2A.10b.2 | 50126 | 50757 | ||||
Y54G2A.11a.1 | 21569 | 15494 | ||||
Y54G2A.11b.1 | 21571 | 15498 | ||||
Y54G2A.11b.2 | 20890 | 15498 | ||||
Y54G2A.11b.3 | 19624 | 15498 | ||||
Y54G2A.12.1 | 32622 | 27002 | ||||
Y54G2A.13.1 | 69512 | 64347 | ||||
Y54G2A.14.1 | 90464 | 89157 | ||||
Y54G2A.14.2 | 91251 | 89150 | ||||
Y54G2A.15.1 | 93761 | 92982 | ||||
Y54G2A.16a.1 | 106894 | 105374 | ||||
Y54G2A.16b.1 | 114622 | 105374 | ||||
Y54G2A.16c.1 | 105951 | 105480 | ||||
Y54G2A.17a.1 | 140230 | 121802 | ||||
Y54G2A.17a.2 | 135116 | 121802 | ||||
Y54G2A.17a.3 | 132127 | 121802 | ||||
Y54G2A.17b.1 | 135071 | 122003 | ||||
Y54G2A.17c.1 | 132082 | 131366 | ||||
Y54G2A.18.1 | 142274 | 141339 | ||||
Y54G2A.19.1 | 144509 | 143593 | ||||
Y54G2A.22.1 | 172022 | 169606 | ||||
Y54G2A.23.1 | 178200 | 177296 | ||||
Y54G2A.25a.1 | 228263 | 214113 | ||||
Y54G2A.25b.1 | 228177 | 222086 | ||||
Y54G2A.26a.1 | 245251 | 235829 | ||||
Y54G2A.26b.1 | 242247 | 236498 | ||||
Y54G2A.26c.1 | 239008 | 236498 | ||||
Y54G2A.28a.1 | 262200 | 259365 | ||||
Y54G2A.28b.1 | 261047 | 259240 | ||||
Y54G2A.28c.1 | 259551 | 259418 | ||||
Y54G2A.29.1 | 278721 | 273182 | ||||
Y54G2A.2a.1 | 38471 | 46584 | ||||
Y54G2A.2b.1 | 38468 | 46592 | ||||
Y54G2A.2c.1 | 43208 | 46379 | ||||
Y54G2A.2d.1 | 45487 | 46379 | ||||
Y54G2A.31.1 | 175470 | 172370 | ||||
Y54G2A.32.1 | 53787 | 54585 | ||||
Y54G2A.32.2 | 53731 | 54692 | ||||
Y54G2A.33.1 | 92253 | 95381 | ||||
Y54G2A.33.2 | 92241 | 95384 | ||||
Y54G2A.35a.1 | 209902 | 214174 | ||||
Y54G2A.35b.1 | 209877 | 214180 | ||||
Y54G2A.36.1 | 147475 | 151427 | ||||
Y54G2A.36.2 | 147475 | 151427 | ||||
Y54G2A.36.3 | 147473 | 151430 | ||||
Y54G2A.36.4 | 147473 | 151429 | ||||
Y54G2A.36.5 | 147883 | 151430 | ||||
Y54G2A.37.1 | 70487 | 73321 | ||||
Y54G2A.38.1 | 9242 | 11862 | ||||
Y54G2A.39a.1 | 73525 | 75426 | ||||
Y54G2A.39b.1 | 75151 | 77848 | ||||
Y54G2A.3a.1 | 262366 | 264219 | ||||
Y54G2A.3b.1 | 262387 | 264217 | ||||
Y54G2A.4.1 | 181182 | 186622 | ||||
Y54G2A.40.1 | 96255 | 101061 | ||||
Y54G2A.41.1 | 1647 | 3242 | ||||
Y54G2A.44.1 | 51637 | 53062 | ||||
Y54G2A.45a.1 | 55636 | 58813 | ||||
Y54G2A.45b.1 | 56688 | 58766 | ||||
Y54G2A.45c.1 | 57718 | 58766 | ||||
Y54G2A.46.1 | 82685 | 83158 | ||||
Y54G2A.47.1 | 84595 | 85065 | ||||
Y54G2A.48.1 | 82466 | 81256 | ||||
Y54G2A.49a.1 | 102644 | 101470 | ||||
Y54G2A.49b.1 | 103043 | 101470 | ||||
Y54G2A.50.1 | 168220 | 169462 | ||||
Y54G2A.50.2 | 168220 | 169458 | ||||
Y54G2A.50.3 | 167808 | 169563 | ||||
Y54G2A.52.1 | 48465 | 46840 | ||||
Y54G2A.57.1 | 219719 | 223245 | ||||
Y54G2A.5a.1 | 136815 | 139030 | ||||
Y54G2A.5b.1 | 136734 | 138815 | ||||
Y54G2A.5c.1 | 137197 | 138800 | ||||
Y54G2A.6a.1 | 100665 | 105235 | ||||
Y54G2A.6b.1 | 104561 | 105199 | ||||
Y54G2A.7.1 | 88387 | 89211 | ||||
Y54G2A.72.1 | 27920 | 28350 | ||||
Y54G2A.73a.1 | 258671 | 250320 | ||||
Y54G2A.73b.1 | 251453 | 250320 | ||||
Y54G2A.75.1 | 140661 | 141415 | ||||
Y54G2A.76.1 | 59189 | 62636 | ||||
Y54G2A.77.1 | 12459 | 15391 | ||||
Y54G2A.8a.1 | 85443 | 88502 | ||||
Y54G2A.8b.1 | 85493 | 88294 | ||||
Pseudogene | Y54G2A.20 | 150417 | 146747 | |||
Y54G2A.21 | 164595 | 152215 | ||||
Y54G2A.24 | 189641 | 187769 | ||||
Y54G2A.42 | 28890 | 30445 | ||||
Transposon | WBTransposon00000722 | 159712 | 152551 | |||
Genomic_non_canonical (12) | ||||||
Nongenomic (4) | ||||||
PCR_product (106) | ||||||
Allele (5253) | ||||||
Oligo_set (52) | ||||||
Feature_object (1976) | ||||||
Feature_data | Y54G2A:Polysome | 1 | 286680 | |||
Y54G2A:TranscriptionallyActiveRegion | 1 | 286680 | ||||
Y54G2A:ChIPSeqTF | 1 | 286680 | ||||
Y54G2A:TRF | 1 | 286680 | ||||
Y54G2A:Dust | 1 | 286680 | ||||
Y54G2A:inverted | 1 | 286680 | ||||
Homol_data (22) | ||||||
Structure | From | Source | CHROMOSOME_IV | |||
Overlap_right | Y67D8C | 282481 | ||||
Overlap_left | Y94H6A | |||||
Clone_left_end | Y54G2 | 1 | ||||
Y67D8 | 199737 | |||||
Y54G2A | 1 | |||||
Clone_right_end | Y54G2 | 286680 | ||||
Y54G2A | 286680 | |||||
DB_info | Database | EMBL | NDB_AC | FO081809 | ||
NDB_ID | _AC024817 | |||||
NDB_SV | FO081809.2 | |||||
Secondary_accession | AC024817 | |||||
DB_remark | The 5' clone is Y94H6A, 200 bp overlap; the 3' clone is Y67D8C, 4200 bp overlap. | |||||
[121025] Sequence correction: SNP 0 bases @ 248905 | ||||||
Keyword | HTG | |||||
EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
Origin | From_author | Wollam C | ||||
Zidanic M | ||||||
From_laboratory | RW | |||||
Date | 17 Dec 1999 00:00:00 | |||||
Date_directory | ||||||
Species | Caenorhabditis elegans | |||||
Visible | Clone | Y54G2A | ||||
Properties | Genomic_canonical | |||||
Checksum | MD5 | 2a5fecbc050dd8e7e490ac288114c6bc | ||||
Status | Finished | |||||
Submitted | 17 Dec 1999 00:00:00 | |||||
Map | Sequence-IV | |||||
Interpolated_map_position | IV | -6.72319 | ||||
Method | Genomic_canonical |