WormBase Tree Display for Sequence: C55H1

C55H1 DNA: C55H1 17703
  SMap: S_child: Gene_child: WBGene00200409 15036 14978
        WBGene00016959 3479 5315
        WBGene00001672 7641 5351
        WBGene00169721 3361 3381
        WBGene00201579 208 420
      CDS_child: C55H1.1:wp261 3368 4730
        C55H1.2 7633 5554
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g142_x14_V_m 7116 6983
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g147_x14_V_m 6368 6214
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g141_x14_V_m 7491 7186
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g216_x14_V_m 7633 7574
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g166_x14_V_m 7633 7219
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g154_x14_V_m 6910 6435
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g184_x14_V_m 6344 6238
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g243_x14_V_m 7633 7574
        RNASEQ_L4_soma_JK1107_no_DNaseI_g215_x14_V_m 7230 7177
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g119_x14_V_m 5843 5557
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g167_x14_V_m 7633 7423
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g125_x14_V_m 7230 6369
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g109_x14_V_m 6350 6042
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g107_x14_V_m 7431 5659
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g146_x14_V_m 7152 6884
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g116_x14_V_m 5843 5557
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g127_x14_V_m 6258 6190
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g120n11_x14_V_m 7633 7525
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g239_x14_V_m 6368 6309
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g173_x14_V_m 6958 6405
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g157_x14_V_m 6113 5997
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g197_x14_V_m 5966 5862
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g178_x14_V_m 7152 7001
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g135_x14_V_m 7441 7202
        C55H1.gc1 3368 3993
        C55H1.gc2 7639 5554
        ContigV.elegans.jigsaw.1628.mRNA1628 7679 5008
        ContigV.elegans.jigsaw.1627.mRNA1627 3368 4730
        AG1201_C55H1.1.T1 3479 3993
        AG1201_C55H1.2.T1 7633 5554
      Transcript: C55H1.3 3361 3381
        C55H1.4 15036 14978
        C55H1.5 208 420
        C55H1.2.1 7641 5351
      Pseudogene: C55H1.1 3479 5315
      PCR_product: cenix:138-g3 6332 7488
        cenix:40-h4 3524 4149
        mv_C55H1.1 3369 4728
        mv_C55H1.2 5556 7632
        p_C55H1.2_93 7634 9633
        sjj_C55H1.1 3457 5104
        sjj_C55H1.2 5849 7488
      Allele: WBVar00461412 16755 16755
        WBVar00461413 16866 16866
        WBVar01496210 4750 5125
        WBVar00263535 15410 15411
        WBVar01973938 146 147
        WBVar01973939 736 737
        WBVar01678058 8489 8489
        WBVar01973940 2256 2257
        WBVar01973941 7778 7778
        WBVar01973942 8517 8526
        WBVar01973943 8934 8938
        WBVar01973944 9679 9680
        WBVar01973945 9924 9924
        WBVar01973946 10545 10546
        WBVar01973947 13135 13136
        WBVar01973948 13171 13171
        WBVar01973949 16870 16871
        WBVar01021037 356 356
        WBVar01021038 1327 1327
        WBVar01021039 1418 1418
        WBVar01021040 1802 1802
        WBVar01021041 2066 2066
        WBVar01021042 2069 2069
        WBVar01021043 2176 2176
        WBVar01021044 2265 2265
        WBVar01021045 2313 2313
        WBVar01021046 2391 2391
        WBVar01021047 2753 2753
        WBVar01021048 3086 3086
        WBVar01021049 3093 3093
        WBVar01021050 3178 3178
        WBVar01021051 3341 3341
        WBVar01021052 3703 3703
        WBVar01021053 3709 3709
        WBVar01021054 4112 4112
        WBVar01021055 4151 4151
        WBVar01021056 4236 4236
        WBVar00239290 8569 5675
        WBVar01021057 4265 4265
        WBVar01021058 4354 4354
        WBVar01021059 4383 4383
        WBVar01021060 4548 4548
        WBVar01497187 1371 1709
        WBVar01021061 4618 4618
        WBVar01021062 4741 4741
        WBVar01021063 4803 4803
        WBVar01021064 5041 5041
        WBVar01021065 5102 5102
        WBVar01021066 5138 5138
        WBVar01021067 5257 5257
        WBVar01021068 5355 5355
        WBVar01021069 5410 5410
        WBVar01021070 5565 5565
        WBVar01021071 5566 5566
        WBVar01021072 5583 5583
        WBVar01021073 5589 5589
        WBVar01021074 5606 5606
        WBVar01021075 5615 5615
        WBVar01021076 5622 5622
        WBVar01021077 6014 6014
        WBVar01021078 6401 6401
        WBVar01021079 6460 6460
        WBVar01021080 6656 6656
        WBVar01021081 6660 6660
        WBVar01021082 6661 6661
        WBVar01021083 6732 6732
        WBVar01021084 6783 6783
        WBVar01021085 6803 6803
        WBVar01786602 4414 4414
        WBVar01021086 6928 6928
        WBVar01021087 6958 6958
        WBVar00210882 793 793
        WBVar00210883 1899 1899
        WBVar01021088 6968 6968
        WBVar01021089 7042 7042
        WBVar00210884 2995 2995
        WBVar00210885 3196 3196
        WBVar00257535 13518 13519
        WBVar01021090 7112 7112
        WBVar00210886 4934 4934
        WBVar01021091 7475 7475
        WBVar01021092 7629 7629
        WBVar00210887 4935 4935
        WBVar01021093 8033 8033
        WBVar00210888 5366 5366
        WBVar00210889 8573 8573
        WBVar01021094 8066 8066
        WBVar00210890 10626 10626
        WBVar01021095 8176 8176
        WBVar01021096 8279 8279
        WBVar00210891 10805 10805
        WBVar00210892 11743 11743
        WBVar01021097 8362 8362
        WBVar01021098 8632 8632
        WBVar00210893 12757 12757
        WBVar00210894 15563 15563
        WBVar01021099 8788 8788
        WBVar00210895 17523 17523
        WBVar01021100 8903 8903
        WBVar01021101 8924 8924
        WBVar00210896 17524 17524
        WBVar01021102 9173 9173
        WBVar01021103 9875 9875
        WBVar01021104 10101 10101
        WBVar01021105 10308 10308
        WBVar01021106 10818 10818
        WBVar01021107 10945 10945
        WBVar02151350 7129 7438
        WBVar01021108 10951 10951
        WBVar01021109 11705 11705
        WBVar01021110 11738 11738
        WBVar01021111 11800 11800
        WBVar01021112 11982 11982
        WBVar01021113 12052 12052
        WBVar01021114 12113 12113
        WBVar01021115 12155 12155
        WBVar01021116 12189 12189
        WBVar01021117 12850 12850
        WBVar01021118 13123 13123
        WBVar01021119 13188 13188
        WBVar01021120 13276 13276
        WBVar01021121 13327 13327
        WBVar01021122 13513 13513
        WBVar01021123 14006 14006
        WBVar01021124 14127 14127
        WBVar01021125 14158 14158
        WBVar01021126 14158 14158
        WBVar01021127 14158 14158
        WBVar01021128 14370 14370
        WBVar01021129 14767 14767
        WBVar01651962 10231 10231
        WBVar01021130 14824 14824
        WBVar01021131 15045 15045
        WBVar02023878 12143 12143
        WBVar02023879 13756 13757
        WBVar01021132 15576 15576
        WBVar01021133 15711 15711
        WBVar01021134 15852 15852
        WBVar01021135 15904 15904
        WBVar01021136 16055 16055
        WBVar01021137 16267 16267
        WBVar02071854 8054 8055
        WBVar01021138 16435 16435
        WBVar01021139 16532 16532
        WBVar01021140 16644 16644
        WBVar01808423 16326 16326
        WBVar01021141 16659 16659
        WBVar01021142 16774 16774
        WBVar01021143 17087 17087
        WBVar01021144 17135 17135
        WBVar01021145 17218 17218
        WBVar01021146 17441 17441
        WBVar00587046 10011 10011
        WBVar01021147 17461 17461
        WBVar01021148 17513 17513
        WBVar01689631 482 482
        WBVar00461389 464 464
        WBVar00461390 495 495
        WBVar01588527 4544 4544
        WBVar00461391 618 618
        WBVar00461392 865 865
        WBVar00461393 1967 1967
        WBVar00461394 2923 2923
        WBVar01460382 4617 4617
        WBVar01460383 5188 5188
        WBVar00461395 3898 3898
        WBVar01460384 5203 5203
        WBVar00461396 4869 4869
        WBVar00461397 5582 5582
        WBVar01460385 5883 5883
        WBVar00461398 5583 5583
        WBVar01460386 6865 6865
        WBVar00461399 5887 5887
        WBVar01460387 6867 6867
        WBVar01460388 6965 6965
        WBVar00461400 7418 7418
        WBVar01460389 9582 9582
        WBVar00461401 7628 7628
        WBVar00461402 8140 8140
        WBVar01460390 9677 9677
        WBVar01741002 3167 3167
        WBVar00461403 9582 9582
        WBVar01741003 4788 4788
        WBVar00461404 10190 10190
        WBVar01741004 10690 10690
        WBVar00461405 13598 13598
        WBVar01741005 12568 12568
        WBVar00461406 14330 14330
        WBVar01741006 14530 14530
        WBVar00461407 15177 15177
        WBVar00461408 15579 15579
        WBVar00461409 15799 15799
        WBVar02077875 4515 4704
        WBVar00461410 15992 15992
        WBVar00461411 16554 16554
      Oligo_set: Aff_C55H1.1 3664 4730
        Aff_C55H1.2 6476 5554
      Feature_object: WBsf1000374 1987 2137
        WBsf1000375 10467 10617
        WBsf1000376 14967 15117
        WBsf1019866 1987 2137
        WBsf1019867 10467 10617
        WBsf022225 7640 7639
        WBsf098859 7421 7421
        WBsf197642 7421 7421
        WBsf252964 5394 5393
        WBsf634296 5409 5408
        WBsf970528 3466 3467
        WBsf530280 2393 2801
        WBsf534199 13388 13398
        WBsf544927 14478 14572
        WBsf549722 8949 9068
        WBsf549838 6412 6473
        WBsf979086 7526 7569
        WBsf669081 6962 6962
        WBsf685969 8770 8770
        WBsf685970 16167 16183
      Feature_data: C55H1:TranscriptionallyActiveRegion 1 17703
        C55H1:ChIPSeqTF 1 17703
        C55H1:TRF 1 17703
        C55H1:Dust 1 17703
      Homol_data: C55H1:RNAi 1 17703
        C55H1:SAGE 1 17703
        C55H1:Expr 1 17703
        C55H1:TEC_RED 1 17703
        C55H1:wublastx_brenneri 1 17703
        C55H1:wublastx_briggsae 1 17703
        C55H1:wublastx_brugia 1 17703
        C55H1:wublastx_fly 1 17703
        C55H1:wublastx_human 1 17703
        C55H1:wublastx_japonica 1 17703
        C55H1:wublastx_ovolvulus 1 17703
        C55H1:wublastx_pristionchus 1 17703
        C55H1:wublastx_remanei 1 17703
        C55H1:wublastx_slimSwissProt 1 17703
        C55H1:wublastx_sratti 1 17703
        C55H1:wublastx_tmuris 1 17703
        C55H1:wublastx_worm 1 17703
        C55H1:wublastx_yeast 1 17703
        C55H1:RepeatMasker 1 17703
  Structure: From: Source: CHROMOSOME_V
    Overlap_right: T19F4 17504
    Overlap_left: T15B7
    Clone_right_end: T15B7 200
  DB_info: Database: EMBL NDB_AC FO080965
        NDB_ID _U55367
        NDB_SV FO080965.1
    Secondary_accession: U55367
    DB_remark: The 5' clone is T15B7, 200 bp overlap; the 3' clone is T19F4, 200 bp overlap. Actual start of this clone is at base position 20240 of T15B7; actual end is at 4008 of T19F4.
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Pauley A
      Gattung S
    From_laboratory: RW
    Date: 15 Mar 1996 00:00:00
    Date_directory: 960306
    Species: Caenorhabditis elegans
  Visible: Clone: C55H1
  Properties: Genomic_canonical
    Checksum: MD5: 9803515e8228d02fdb5848881b545ab6
    Status: Finished
      Submitted: 15 Mar 1996 00:00:00
  Map: Sequence-V
  Interpolated_map_position: V 0.356281
  Method: Genomic_canonical