WormBase Tree Display for Sequence: F56H9
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| F56H9 | DNA | F56H9 | 28290 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | Gene_child | WBGene00189948 | 20534 | 22413 | |
| WBGene00044198 | 5577 | 4617 | ||||
| WBGene00001671 | 25047 | 21211 | ||||
| WBGene00050977 | 9372 | 8224 | ||||
| WBGene00006004 | 7882 | 5904 | ||||
| WBGene00010174 | 13397 | 13970 | ||||
| WBGene00001670 | 16218 | 14400 | ||||
| CDS_child (160) | ||||||
| Transcript | F56H9.4a | 25047 | 22574 | |||
| F56H9.1.1 | 7882 | 5904 | ||||
| F56H9.2a.1 | 13397 | 13970 | ||||
| F56H9.2b.1 | 13760 | 13837 | ||||
| F56H9.3.1 | 16218 | 14400 | ||||
| F56H9.4b.1 | 22972 | 21211 | ||||
| F56H9.6.1 | 5577 | 4617 | ||||
| F56H9.8a.1 | 20534 | 22366 | ||||
| F56H9.8a.2 | 20565 | 22413 | ||||
| F56H9.8b.1 | 21495 | 22366 | ||||
| Pseudogene | F56H9.7 | 9372 | 8224 | |||
| PCR_product (14) | ||||||
| Allele (359) | ||||||
| Oligo_set | Aff_F56H9.1 | 5439 | 4691 | |||
| Aff_F56H9.2 | 13420 | 13837 | ||||
| Aff_F56H9.3 | 15452 | 14586 | ||||
| Aff_F56H9.4 | 24184 | 22662 | ||||
| Aff_ZC116.3 | 3598 | 4429 | ||||
| Feature_object (221) | ||||||
| Feature_data | F56H9:Polysome | 1 | 28290 | |||
| F56H9:TranscriptionallyActiveRegion | 1 | 28290 | ||||
| F56H9:ChIPSeqTF | 1 | 28290 | ||||
| F56H9:TRF | 1 | 28290 | ||||
| F56H9:Dust | 1 | 28290 | ||||
| F56H9:inverted | 1 | 28290 | ||||
| Homol_data (20) | ||||||
| Structure | From | Source | CHROMOSOME_V | |||
| Overlap_right | W05B10 | 28194 | ||||
| Overlap_left | ZC116 | |||||
| Clone_left_end | F56H9 | 1 | ||||
| W05B10 | 28194 | |||||
| Clone_right_end | ZC116 | 18114 | ||||
| DB_info | Database | EMBL | NDB_AC | Z74473 | ||
| NDB_SV | Z74473.2 | |||||
| DB_remark | [121025] Sequence correction WBsf268367 : Deletion A-1 bases @ 23193 | |||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | Burton J | ||||
| From_laboratory | HX | |||||
| Date_directory | 960313 | |||||
| Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00000001 | |||||
| Visible | Clone | F56H9 | ||||
| Properties | Genomic_canonical | |||||
| Checksum | MD5 | b41809155885572a1349e876e7f1188d | ||||
| Status | Finished | 13 Mar 1996 00:00:00 | ||||
| Submitted | 20 Jun 1996 00:00:00 | |||||
| Annotated | 18 Jun 1996 00:00:00 | |||||
| Map | Sequence-V | Ends | Left | 7219 | ||
| Right | 7238 | |||||
| Interpolated_map_position | V | 4.53915 | ||||
| Assembly_tags | Clone left end | 1 | 4 | F56H9 | ||
| 28192 | 28199 | W05B10 Not I site | ||||
| Finished Left | 1 | 1 | ||||
| annotation | 8792 | 8792 | base has primer and terminator (walks and universal primer) reads. The term spacing suggests a base here, and primer sequencing suggests a G. However none of the terms show a clear base, so there is an element of doubt about the identity of this base | |||
| 24392 | 24398 | single template over these 7 bases | ||||
| Clone right end | 18109 | 18114 | ZC116 | |||
| Finished Right | 28290 | 28290 | ||||
| Method | Genomic_canonical |
