WormBase Tree Display for Sequence: Y40D12A

Y40D12A DNA: Y40D12A 9871
  SMap: S_child: Gene_child: WBGene00021503 2329 4950
        WBGene00021502 5215 9852
        WBGene00005263 623 2362
      CDS_child: Y40D12A.1 5232 9656
        Y40D12A.1b:wp282 5232 6331
        Y40D12A.2 2354 4867
        Y40D12A.3 623 2064
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g67n11m6_x14_III_p 5232 9653
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g81_x14_III_p 2354 4819
        RNASEQ_Adult_spe-9_23dC_8days_post-L4_molt_g73_x14_III_p 6315 6389
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g197_x14_III_p 2500 2553
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g180_x14_III_p 3052 3401
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g112_x14_III_p 3498 3731
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g175_x14_III_p 6609 6795
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g86n11_x14_III_p 5232 5421
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g190_x14_III_p 4098 4762
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g108_x14_III_p 5547 6572
        RNASEQ_dauer_daf-2_25dC_91hrs_post-L1_g100_x14_III_p 6942 9653
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g243_x14_III_p 6715 6798
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g129_x14_III_p 3997 4777
        RNASEQ_dauer_entry_daf-2_25dC_48hrs_post-L1_g146_x14_III_p 5547 6122
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g99_x14_III_p 2525 2818
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g92_x14_III_p 3417 3671
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g52_x14_III_p 3052 3392
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g147_x14_III_p 2354 2422
        RNASEQ_dauer_exit_daf-2_25dC_91hrs_15dC_12hrs_post-L1_g88_x14_III_p 3997 4777
        RNASEQ_embryo_him-8_20dC_post-L1_g203_x14_III_p 3498 3560
        RNASEQ_embryo_him-8_20dC_post-L1_g110_x14_III_p 6609 6822
        RNASEQ_embryo_him-8_20dC_post-L1_g71_x14_III_p 6942 9653
        RNASEQ_embryo_him-8_20dC_post-L1_g63_x14_III_p 5880 6536
        RNASEQ_male_mid-L4_25dC_30hrs_post-L1_g127_x14_III_p 5547 6248
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g110_x14_III_p 5880 6569
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g116_x14_III_p 6609 9653
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g107_x14_III_p 5547 5723
        RNASEQ_lin-35_n745_mid-L1_25dC_4.0hrs_post-L1_g64_x14_III_p 2354 4825
        RNASEQ_early_embryo_g136_x14_III_p 4059 4828
        RNASEQ_early_embryo_g58n11m6_x14_III_p 6177 6389
        RNASEQ_early_embryo_g103_x14_III_p 2848 3999
        RNASEQ_early_embryo_g58n11_x14_III_p 6315 9653
        RNASEQ_early_embryo_g58n11e10k80_x14_III_p 5232 6328
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g91_x14_III_p 2848 4804
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g66n11_x14_III_p 5232 9653
        RNASEQ_late_embryo_20dC_4.5hrs_post-early_embryo_g66n11e9k67_x14_III_p 6882 7019
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g69_x14_III_p 5547 9653
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g24_x14_III_p 2354 4139
        RNASEQ_mid-L1_20dC_4hrs_post-L1_g49_x14_III_p 4490 4864
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g116_x14_III_p 6315 9653
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g126_x14_III_p 5547 6026
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g25_x14_III_p 4058 4864
        RNASEQ_mid-L2_25dC_14hrs_post-L1_g23e9k96_x14_III_p 2354 4184
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g142n11_x14_III_p 8993 9653
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g62_x14_III_p 2354 3063
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g14n11_x14_III_p 2848 4864
        RNASEQ_mid-L3_25dC_25hrs_post-L1_g57n11_x14_III_p 5232 9013
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g113_x14_III_p 5598 9653
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g30_x14_III_p 2354 4139
        RNASEQ_mid-L4_25dC_36hrs_post-L1_g47_x14_III_p 4490 4864
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g61n11_x14_III_p 5232 9653
        RNASEQ_Adult_Harposporium_exposed_2_24hrs_g91_x14_III_p 2354 4864
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g127_x14_III_p 2354 2553
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g112_x14_III_p 3178 3803
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g222_x14_III_p 3883 3948
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g147_x14_III_p 4059 4732
        RNASEQ_Adult_Harposporium_control_EcoliOP50_exposed_2_24hrs_g65n11_x14_III_p 5232 9653
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g92_x14_III_p 6942 9653
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g67n11_x14_III_p 5232 6500
        RNASEQ_Adult_S_macescens_Db10_exposed_1_24hrs_g44_x14_III_p 2354 4828
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g115_x14_III_p 3363 4813
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g68n11_x14_III_p 5232 6134
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g83_x14_III_p 6315 9013
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g103n11_x14_III_p 8993 9653
        RNASEQ_Adult_S_macescens_Db10_control_EcoliOP50_exposed_1_24hrs_g117_x14_III_p 2354 2895
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g41_x14_III_p 2354 4864
        RNASEQ_Young_Adult_25dC_46hrs_post-L1_g55n11_x14_III_p 5232 9653
        Y40D12A.gc1 776 5098
        Y40D12A.gc2 5232 9656
        ContigIII.elegans.jigsaw.1271.mRNA1271 5049 9853
        ContigIII.elegans.jigsaw.1270.mRNA1270 2299 4949
        ContigIII.elegans.jigsaw.1269.mRNA1269 549 2113
        AG1201_Y40D12A.3.T1 623 2064
        AG1201_Y40D12A.2.T1 2354 4142
        AG1201_Y40D12A.2.T2 2354 4867
        AG1201_Y40D12A.2.T3 2354 4867
        AG1201_Y40D12A.1.T5 5232 5777
        AG1201_Y40D12A.1.T4 5232 6203
        AG1201_Y40D12A.1.T3 5232 9656
        AG1201_Y40D12A.1.T2 5880 9656
        AG1201_Y40D12A.1.T1 6315 9656
      Transcript: Y40D12A.1.1 5215 9852
        Y40D12A.2.1 2329 4950
        Y40D12A.3.1 623 2362
      PCR_product: TH:302A3 2501 3446
        TH:302H2 487 2120
        TH:307E7 5255 7499
        cenix:302-a3 2497 3450
        cenix:302-h2 483 2124
        cenix:307-e7 5251 7503
        mv_Y40D12A.1 5233 9231
        mv_Y40D12A.2 2355 4865
        mv_Y40D12A.3 624 2062
        p_Y40D12A.1a_93 4866 5231
        p_Y40D12A.2_93 2054 2353
        sjj_Y40D12A.1 5391 6469
        sjj_Y40D12A.2 2906 4102
        sjj_Y40D12A.3 955 2094
      Allele: WBVar00563550 6045 6045
        WBVar00400165 67 67
        WBVar00400166 1960 1960
        WBVar00400167 2215 2215
        WBVar00400168 3048 3048
        WBVar02146157 6922 7013
        WBVar00400169 3156 3156
        WBVar00400170 3612 3612
        WBVar00254340 8828 8829
        WBVar01264524 311 311
        WBVar00400171 4039 4039
        WBVar00254341 8834 8835
        WBVar01264525 713 713
        WBVar01264526 1356 1356
        WBVar00400172 5438 5438
        WBVar01264527 4936 4936
        WBVar00400173 6016 6016
        WBVar00400174 6400 6400
        WBVar01264531 6581 6581
        WBVar00400175 7048 7048
        WBVar00400176 8356 8356
        WBVar00400177 8978 8978
        WBVar01628619 2586 2586
        WBVar00400178 8995 8995
        WBVar01952286 36 52
        WBVar01952287 5539 5539
        WBVar01952288 8076 8076
        WBVar00258966 7016 7017
        WBVar01396906 7021 7021
        WBVar00258970 7012 7013
        WBVar01995417 7411 7412
        WBVar01645181 971 971
        WBVar01645182 975 975
        WBVar02068624 8075 8076
        WBVar01645183 6054 6054
        WBVar01645184 6059 6059
        WBVar01645185 6413 6413
        WBVar01645186 7227 7227
        WBVar01893527 8689 8689
        WBVar01656907 3570 3570
        WBVar01656908 7848 7848
        WBVar01408751 1682 1683
        WBVar00252927 5644 5933
        WBVar00834571 134 134
        WBVar00834572 414 414
        WBVar00834573 489 489
        WBVar00834574 547 547
        WBVar00834575 632 632
        WBVar00834576 653 653
        WBVar00062377 2902 2902
        WBVar00834577 660 660
        WBVar00834578 1127 1127
        WBVar00062382 3516 3516
        WBVar00834579 1150 1150
        WBVar02010575 7137 7153
        WBVar00834580 2030 2030
        WBVar00834581 2709 2709
        WBVar00834582 2772 2772
        WBVar00313092 8307 8307
        WBVar00062387 5497 5497
        WBVar00834583 2803 2803
        WBVar01722643 8593 8593
        WBVar00834584 3115 3115
        WBVar00062392 7024 7024
        WBVar00834585 3532 3532
        WBVar00834586 3571 3571
        WBVar00834587 3622 3622
        WBVar00834588 3721 3721
        WBVar00834589 3796 3796
        WBVar00834590 4183 4183
        WBVar00257386 915 916
        WBVar00834591 4239 4239
        WBVar00834592 4389 4389
        WBVar00834593 4427 4427
        WBVar00834594 4588 4588
        WBVar00834595 4663 4663
        WBVar00834596 4698 4698
        WBVar00834597 4937 4937
        WBVar00834598 5075 5075
        WBVar00834599 5076 5076
        WBVar00834600 5078 5078
        WBVar00834601 5216 5216
        WBVar00834602 5672 5672
        WBVar02007738 984 985
        WBVar00834603 6080 6080
        WBVar00834604 6135 6135
        WBVar00834605 6211 6211
        WBVar00834606 7053 7053
        WBVar00834607 7937 7937
        WBVar00834608 8050 8050
        WBVar00834609 8109 8109
        WBVar00834610 8545 8545
        WBVar00834611 8715 8715
        WBVar00834612 8768 8768
        WBVar00099504 1723 1723
        WBVar00262928 2950 2951
        WBVar00834613 8825 8825
        WBVar02132190 4353 4353
        WBVar01446211 556 556
        WBVar01446212 564 564
        WBVar01446213 3956 3956
        WBVar01541785 1292 1292
        WBVar00263686 8511 8512
        WBVar01837685 1050 1050
        WBVar01837686 1051 1051
        WBVar02096854 971 984
      Oligo_set: Aff_Y40D12A.1 6525 9233
        Aff_Y40D12A.2 3822 4867
        Aff_Y40D12A.3 1173 2064
      Feature_object: WBsf003627 5214 5215
        WBsf074525 5424 5424
        WBsf075407 204 204
        WBsf078302 198 198
        WBsf078303 4940 4940
        WBsf161652 8917 8918
        WBsf166313 4904 4904
        WBsf168420 2899 2899
        WBsf168421 6136 6136
        WBsf171004 5214 5215
        WBsf175394 4903 4904
        WBsf225129 133 193
        WBsf225130 4868 4900
        WBsf225131 4868 4940
        WBsf246431 197 198
        WBsf246432 4948 4949
        WBsf246433 4901 4902
        WBsf247640 8662 8663
        WBsf618681 4914 4915
        WBsf619432 215 216
        WBsf958952 2469 2470
        WBsf958953 4821 4820
        WBsf394525 4884 5153
        WBsf394598 6271 6474
        WBsf396318 4891 5221
        WBsf396682 4609 5307
        WBsf397842 2157 2443
        WBsf398329 4981 5247
        WBsf400066 5001 5151
        WBsf401726 4915 5222
        WBsf403248 4930 5293
        WBsf406515 5036 5159
        WBsf407777 4915 5176
        WBsf408703 2096 2490
        WBsf410082 4992 5191
        WBsf412921 4936 5213
        WBsf413182 4885 5232
        WBsf413985 4955 5202
        WBsf416246 4955 5168
        WBsf416803 4926 5256
        WBsf421313 4977 5207
        WBsf424681 2134 2464
        WBsf426039 4960 5163
        WBsf427164 4841 5351
        WBsf428132 4814 5319
        WBsf430121 4940 5226
        WBsf431893 4950 5216
        WBsf432730 4917 5241
        WBsf434728 4914 5256
        WBsf436387 4878 5293
        WBsf437804 4989 5177
        WBsf438069 1403 1433
        WBsf438784 4883 5228
        WBsf440065 2817 2829
        WBsf441077 4889 5141
        WBsf441462 2141 2423
        WBsf442712 5044 5149
        WBsf046952 4887 5574
        WBsf898872 9078 9078
        WBsf645274 2322 2340
        WBsf645275 5078 5122
        WBsf701591 5008 4985
        WBsf261990 3024 3249
        WBsf261991 3284 3394
        WBsf261992 3804 3852
        WBsf265400 6394 6498
      Feature_data: Y40D12A:Polysome 1 9871
        Y40D12A:TranscriptionallyActiveRegion 1 9871
        Y40D12A:ChIPSeqTF 1 9871
        Y40D12A:TRF 1 9871
        Y40D12A:Dust 1 9871
        Y40D12A:inverted 1 9871
      Homol_data: Y40D12A:RNAi 1 9871
        Y40D12A:SAGE 1 9871
        Y40D12A:Mass-spec 1 9871
        Y40D12A:wublastx_brenneri 1 9871
        Y40D12A:wublastx_briggsae 1 9871
        Y40D12A:wublastx_brugia 1 9871
        Y40D12A:wublastx_fly 1 9871
        Y40D12A:wublastx_human 1 9871
        Y40D12A:wublastx_japonica 1 9871
        Y40D12A:wublastx_ovolvulus 1 9871
        Y40D12A:wublastx_pristionchus 1 9871
        Y40D12A:wublastx_remanei 1 9871
        Y40D12A:wublastx_slimSwissProt 1 9871
        Y40D12A:wublastx_sratti 1 9871
        Y40D12A:wublastx_worm 1 9871
        Y40D12A:wublastx_yeast 1 9871
        Y40D12A:RepeatMasker 1 9871
  Structure: From: Source: CHROMOSOME_III
    Overlap_right: C13B9 9072
    Overlap_left: F20H11
    Clone_left_end: C13B9 9072
      Y40D12A 1
    Clone_right_end: F20H11 200
  DB_info: Database: EMBL NDB_AC FO080525
        NDB_ID _AF078792
        NDB_SV FO080525.2
    Secondary_accession: AC006758
      AF078792
    DB_remark: The 5' clone is F20H11, 200 bp overlap; the 3' clone is C13B9, 800 bp overlap. Actual end of this clone is at base position 9201 of C13B9.
      [121025] Sequence correction: SNP 0 bases @ 9078
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Smith A
      Harmon G
    From_laboratory: RW
    Date: 22 Jan 1998 00:00:00
    Date_directory
    Species: Caenorhabditis elegans
  Visible: Clone: Y40D12A
    Remark: added 600 bp to the 3' end 020402 db
  Properties: Genomic_canonical
    Checksum: MD5: df5aae672ef99c63a67cd8787a20213c
    Status: Finished
      Submitted: 22 Jan 1998 00:00:00
  Map: Sequence-III
  Interpolated_map_position: III -1.03597
  Method: Genomic_canonical